Research Article

BacPP: a web-based tool for Gram-negative bacterial promoter prediction

Published: April 04, 2016
Genet. Mol. Res. 15(2): gmr7973 DOI: https://doi.org/10.4238/gmr.15027973
Cite this Article:
deAvila e Silva, D.L. Notari, F.A. Neis, H.G. Ribeiro, S. Echeverrigaray, deAvila e Silva, D.L. Notari, F.A. Neis, H.G. Ribeiro, S. Echeverrigaray, deAvila e Silva, D.L. Notari, F.A. Neis, H.G. Ribeiro, S. Echeverrigaray (2016). BacPP: a web-based tool for Gram-negative bacterial promoter prediction. Genet. Mol. Res. 15(2): gmr7973. https://doi.org/10.4238/gmr.15027973
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Abstract

Bacterial Promoter Prediction (BacPP) is a tool used to predict given sequences as promoters of Gram-negative bacteria according to the σ factor that recognizes it. The first version of BacPP was implemented in Python language in a desktop version without a friendly interface. For this reason, a web version of BacPP is now available with the purpose of improving its usability and availability. The present paper describes the implementation of the web version of this tool, focusing on its software architecture and user functionalities. The software is available at www.bacpp.bioinfoucs.com/home.

Bacterial Promoter Prediction (BacPP) is a tool used to predict given sequences as promoters of Gram-negative bacteria according to the σ factor that recognizes it. The first version of BacPP was implemented in Python language in a desktop version without a friendly interface. For this reason, a web version of BacPP is now available with the purpose of improving its usability and availability. The present paper describes the implementation of the web version of this tool, focusing on its software architecture and user functionalities. The software is available at www.bacpp.bioinfoucs.com/home.