Research Article

Genetic diversity in cowpea landraces analyzed by ISSR markers

Published: March 28, 2019
Genet. Mol. Res. 18(1): GMR18082 DOI: 10.4238/gmr18082


The cowpea, Vigna unguiculata (Fabeaceae) is widely cultivated in semi-arid regions, such as northeast Brazil. Due to the low crop yields in this region, it would be useful to develop cultivars adapted to these climate conditions. Landraces are seen as an important source of germplasm to be used in breeding programs of this species due to their good adaptation to the environment, but for this strategy to be viable, their genetic variability must be studied. To this end, we evaluated the genetic diversity, using ISSR molecular markers, of 52 samples of cowpea landraces collected mostly from small producers from all over the state of Ceará, Brazil. The DNA of the genotypes was extracted and analyzed using 25 primers. Based on the electrophoresis profiles of the bands, a genetic dissimilarity matrix was prepared, and a cluster analysis made using the UPGMA and modified Tocher methods. Fourteen primers amplified 80 bands, of which 61 were polymorphic, generating a polymorphism rate of 76%. The selected markers were efficient in identifying genetic variability among the varieties under evaluation, providing a large amount of information. The polymorphic information content varied from 0.13 to 0.66 and the band frequency ranged from 0.01 to 1.00. The two clustering methods agreed in the number of groups formed (n = 6), with the genetic distances ranging from 0.05 to 0.31, values considered low, suggesting a narrow genetic base for the landraces of this species in Ceará state.