Differentially expressed gene

Discovery of differentially expressed genes in cashmere goat (Capra hircus) hair follicles by RNA sequencing

X. Qiao, Wu, J. H., Wu, R. B., Su, R., Li, C., Zhang, Y. J., Wang, R. J., Zhao, Y. H., Fan, Y. X., Zhang, W. G., Li, J. Q., Qiao, X., Wu, J. H., Wu, R. B., Su, R., Li, C., Zhang, Y. J., Wang, R. J., Zhao, Y. H., Fan, Y. X., Zhang, W. G., and Li, J. Q., Discovery of differentially expressed genes in cashmere goat (Capra hircus) hair follicles by RNA sequencing, vol. 15, p. -, 2016.

The mammalian hair follicle (HF) is a unique, highly regenerative organ with a distinct developmental cycle. Cashmere goat (Capra hircus) HFs can be divided into two categories based on structure and development time: primary and secondary follicles. To identify differentially expressed genes (DEGs) in the primary and secondary HFs of cashmere goats, the RNA sequencing of six individuals from Arbas, Inner Mongolia, was performed. A total of 617 DEGs were identified; 297 were upregulated while 320 were downregulated.

A new method for estimating the number of non-differentially expressed genes

J. Wu, Liu, C. Y., Chen, W. T., Ma, W. Y., Ding, Y., Wu, J., Liu, C. Y., Chen, W. T., Ma, W. Y., Ding, Y., Wu, J., Liu, C. Y., Chen, W. T., Ma, W. Y., and Ding, Y., A new method for estimating the number of non-differentially expressed genes, vol. 15, p. -, 2016.

Control of the false discovery rate is a statistical method that is widely used when identifying differentially expressed genes in high-throughput sequencing assays. It is often calculated using an adaptive linear step-up procedure in which the number of non-differentially expressed genes should be estimated accurately. In this paper, we discuss the estimation of this parameter and point out defects in the original estimation method. We also propose a new estimation method and provide the error estimation.

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