Microsatellite

High diversity of cultivated lima beans (Phaseolus lunatus) in Brazil consisting of one Andean and two Mesoamerican groups with strong introgression between the gene pools

R. N. O. Silva, Lopes, A. C. A., Gomes, R. L. F., Pádua, J. G., and Burle, M. L., “High diversity of cultivated lima beans (Phaseolus lunatus) in Brazil consisting of one Andean and two Mesoamerican groups with strong introgression between the gene pools”, Genetics and Molecular Research, vol. 18, no. 4, 2019.

Development and characterization of twenty-eight polymorphic microsatellite for rice field eel (Monopterus albus) using RAD tag sequencing

F. Zhang, Wang, Y., Xu, M., Wei, L., and Zhong, Q., “Development and characterization of twenty-eight polymorphic microsatellite for rice field eel (Monopterus albus) using RAD tag sequencing”, Genetics & Molecular Research, vol. 17, no. 1, 2018.

Characterization of 33 microsatellite markers and development of multiplex PCR for yellow-throated marten (Martes flavigula)

M. Yeong Lee, Moon, H. Chang, Jeon, H. Sook, Song, E. Geun, Woo, D., Park, H. B., Choi, T. Young, Eo, K. Yeon, Hyun, Y., Lee, K., Park, Y. Seok, Moon, J. Young, Han, H. Jin, and An, J., “Characterization of 33 microsatellite markers and development of multiplex PCR for yellow-throated marten (Martes flavigula)”, Genetics and Molecular Research, vol. 16, 2017.

Characterization of novel expressed sequence tag-simple sequence repeat markers and analysis of genetic diversity in four geographic populations of Thais luteostoma

W. Li, Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., Bao, Y. B., Li, W., Jiao, H. F., Lin, Z. H., and Bao, Y. B., “Characterization of novel expressed sequence tag-simple sequence repeat markers and analysis of genetic diversity in four geographic populations of Thais luteostoma”, vol. 15, no. 4, p. -, 2016.

INTRODUCTION

Fine-scale genetic structure patterns in two freshwater fish species, Geophagus brasiliensis (Osteichthyes, Cichlidae) and Astyanax altiparanae (Osteichthyes, Characidae) throughout a Neotropical stream

D. G. Ferreira, Lima, S. C., Frantine-Silva, W., Silva, J. F., Apolinário-Silva, C., Sofia, S. H., Carvalho, S., Galindo, B. A., Ferreira, D. G., Lima, S. C., Frantine-Silva, W., Silva, J. F., Apolinário-Silva, C., Sofia, S. H., Carvalho, S., and Galindo, B. A., “Fine-scale genetic structure patterns in two freshwater fish species, Geophagus brasiliensis (Osteichthyes, Cichlidae) and Astyanax altiparanae (Osteichthyes, Characidae) throughout a Neotropical stream”, vol. 15, no. 4, p. -, 2016.

INTRODUCTION

Selecting soybean resistant to the cyst nematode Heterodera glycines using simple sequence repeat (microssatellite) markers

S. M. C. G. Espindola, Hamawaki, O. T., Oliveira, A. P., Hamawaki, C. D. L., Hamawaki, R. L., Takahashi, L. M., Espindola, S. M. C. G., Hamawaki, O. T., Oliveira, A. P., Hamawaki, C. D. L., Hamawaki, R. L., and Takahashi, L. M., “Selecting soybean resistant to the cyst nematode Heterodera glycines using simple sequence repeat (microssatellite) markers”, vol. 15, p. -, 2016.

The soybean cyst nematode (SCN) is a major cause of soybean yield reduction. The objective of this study was to evaluate the efficiency of marker-assisted selection to identify genotypes resistant to SCN race 3 infection, using Sat_168 and Sat-141 resistance quantitative trait loci.

Isolation and characterization of new microsatellite loci in Fenneropenaeus penicillatus

B. B. Li, Li, Z. B., Ning, Y. F., Shangguan, J. B., Huang, Y. S., Yuan, Y., Mao, X. Q., Li, B. B., Li, Z. B., Ning, Y. F., Shangguan, J. B., Huang, Y. S., Yuan, Y., Mao, X. Q., Li, B. B., Li, Z. B., Ning, Y. F., Shangguan, J. B., Huang, Y. S., Yuan, Y., and Mao, X. Q., “Isolation and characterization of new microsatellite loci in Fenneropenaeus penicillatus”, vol. 15, p. -, 2016.

Fenneropenaeus penicillatus is one of the major economic shrimp species in China. In this study, 14 novel microsatellite loci were developed using the fast isolation protocol with amplified fragment length polymorphism of sequences containing repeats (FIASCO). Polymorphisms were tested in 30 individuals from a single-wild population. The results showed that the number of alleles at each locus ranged from two to four, and the polymorphism information content varied from 0.314 to 0.692.

Molecular characterization of twenty polymorphic microsatellite markers in the polyploid fruit tree species Syzygium samarangense (Myrtaceae)

J. M. Lai, Tsai, C. C., Yen, C. R., Ko, Y. Z., Chen, S. R., Weng, I. S., Lin, Y. S., and Chiang, Y. C., “Molecular characterization of twenty polymorphic microsatellite markers in the polyploid fruit tree species Syzygium samarangense (Myrtaceae)”, vol. 14, pp. 13013-13021, 2015.

Syzygium samarangense (Blume) Merr. & Perry (wax apple) is an important commercial fruit tree in Southeast Asia. Here, microsatellite markers were developed to evaluate genetic diversity and distinguish cultivars in this species. In total, 161 microsatellite loci with sufficient flanking sequences to design primer sets were isolated from wax apple using a magnetic bead-enrichment method. Fifty-eight primer sets were designed based on the flanking sequences of each single sequence repeat (SSR) locus and were tested using 14 wax apple cultivars/lines.

Rapid microsatellite development in Gekko japonicus using sequenced restriction-site associated DNA markers

L. Wei, Shao, W. W., Zhou, H. B., Ping, J., Li, L. M., and Zhang, Y. P., “Rapid microsatellite development in Gekko japonicus using sequenced restriction-site associated DNA markers”, vol. 14, pp. 14119-14122, 2015.

Twelve polymorphic microsatellite loci were isolated in the Japanese gecko, Gekko japonicus. We genotyped one population from Wenzhou, Zhejiang Province, China (N = 36). The mean number of observed alleles per locus was 7.3 (range 4 to 13). Observed and expected heterozygosity values ranged from 0.200 to 0.944 and from 0.395 to 0.797, respectively. One locus (GJ20) showed significant departure from Hardy-Weinberg equilibrium; no linkage disequilibrium was found between any two loci.

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