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2016
S. G. Fan, Wei, J. F., Guo, Y. H., Huang, G. J., Yu, D. H., Fan, S. G., Wei, J. F., Guo, Y. H., Huang, G. J., Yu, D. H., Fan, S. G., Wei, J. F., Guo, Y. H., Huang, G. J., and Yu, D. H., Development of coding single nucleotide polymorphic markers in the pearl oyster Pinctada fucata based on next-generation sequencing and high-resolution melting analysis, vol. 15, no. 4, p. -, 2016.
The authors declare no conflict of interest. ACKNOWLEDGMENTS Research supported by the PhD Start-Up Fund of Natural Science Foundation of Guangdong Province (#2014A030310237), the Natural Science Foundation Program of Hainan Province (#20154180), the Basic Scientific Research Fund for the Central Institutes of Public Welfare (South China Sea Fisheries Research Institute, #2014TS08), the Special Fund for Marine Fisheries Research and Extension of Guangdong Province (#A201401A07, #Z2015010), the National Natural Science Foundation of China (#31372525), and the Earmarked Fund for China Agriculture Research System (#CARS-48). REFERENCES An XP, Song YX, Hou JX, Han P, et al (2015). Mutations in the MTHFR gene and their associations with milk production traits in dairy goats. Small Rumin. Res. 130: 76-80. http://dx.doi.org/10.1016/j.smallrumres.2015.06.008 Bayır M, Bayır A, Wright JM, et al (2015). Divergent spatial regulation of duplicated fatty acid-binding protein (fabp) genes in rainbow trout (Oncorhynchus mykiss). Comp. Biochem. Physiol. Part D Genomics Proteomics 14: 26-32. http://dx.doi.org/10.1016/j.cbd.2015.02.002 Bergstrom DE, Young M, Albrecht KH, Eicher EM, et al (2000). Related function of mouse SOX3, SOX9, and SRY HMG domains assayed by male sex determination. Genesis 28: 111-124. http://dx.doi.org/10.1002/1526-968X(200011/12)28:3/4<111::AID-GENE40>3.0.CO;2-5 Cenciarelli C, Chiaur DS, Guardavaccaro D, Parks W, et al (1999). Identification of a family of human F-box proteins. Curr. Biol. 9: 1177-1179. http://dx.doi.org/10.1016/S0960-9822(00)80020-2 Cui G, Zhang L, Xu Y, Cianflone K, et al (2013). Development of a high resolution melting method for genotyping of risk HLA-DQA1 and PLA2R1 alleles and ethnic distribution of these risk alleles. Gene 514: 125-130. http://dx.doi.org/10.1016/j.gene.2012.11.004 Gao L, Chen M, Chang Y, Ji N, et al (2013). Development of SNP markers associated with defense mechanism of sea cucumber, Apostichopus japonicas. Conserv. Genet. Resour. 5: 587-591. http://dx.doi.org/10.1007/s12686-013-9858-z Gao Q, Ju Z, Zhang Y, Huang J, et al (2014). Association of TNP2 gene polymorphisms of the bta-miR-154 target site with the semen quality traits of Chinese Holstein bulls. PLoS One 9: e84355. http://dx.doi.org/10.1371/journal.pone.0084355 Gomez-Uchida D, Seeb L, Warheit K, McKinney G, et al (2014). Deep sequencing of the transcriptome and mining of single nucleotide polymorphisms (SNPs) provide genomic resources for applied studies in Chinook salmon (Oncorhynchus tshawytscha). Conserv. Genet. Resour. 6: 807-811. http://dx.doi.org/10.1007/s12686-014-0235-3 Grabherr MG, Haas BJ, Yassour M, Levin JZ, et al (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29: 644-652. http://dx.doi.org/10.1038/nbt.1883 Guo L, Li L, Zhang S, Guo X, et al (2011). Novel polymorphisms in the myostatin gene and their association with growth traits in a variety of bay scallop, Argopecten irradians. Anim. Genet. 42: 339-340. http://dx.doi.org/10.1111/j.1365-2052.2011.02172.x Huang X, Wu S, Guan Y, Li Y, et al (2014a). Identification of sixteen single-nucleotide polymorphism markers in the pearl oyster, Pinctada fucata, for population genetic structure analysis. J. Genet. 93: e1-e4. Huang J, Zhang Y, Li J, Yu Z, et al (2014b). Development of SNP markers in Crassostrea hongkongensis based on the next-generation sequencing and high resolution melting analysis. Conserv. Genet. Resour. 6: 559-562. http://dx.doi.org/10.1007/s12686-014-0218-4 Jones DB, Jerry DR, Forêt S, Konovalov DA, et al (2013). Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Mar. Biotechnol. (NY) 15: 647-658. http://dx.doi.org/10.1007/s10126-013-9514-3 Kipreos ET, Pagano M, et al (2000). The F-box protein family. Genome Biol. 1: S3002. http://dx.doi.org/10.1186/gb-2000-1-5-reviews3002 Klinbunga S, Sittikankaew K, Jantee N, Prakopphet S, et al (2015). Expression levels of vitellogenin receptor (Vtgr) during ovarian development and association between its single nucleotide polymorphisms (SNPs) and reproduction-related parameters of the giant tiger shrimp Penaeus monodon. Aquaculture 435: 18-27. http://dx.doi.org/10.1016/j.aquaculture.2014.09.013 Li Y, Liu W, Lin J, He M, et al (2016). Development of SNP markers in Pinctada fucata and its application for family genetic analysis. Mar. Sci. Bull. 35: 96-102. Liu L, Yu X, Tong J, et al (2012). Molecular characterization of myostatin (MSTN) gene and association analysis with growth traits in the bighead carp (Aristichthys nobilis). Mol. Biol. Rep. 39: 9211-9221. http://dx.doi.org/10.1007/s11033-012-1794-6 Lu L, Zhou ZM, Huang XY, Xu M, et al (2005). Identification and characterization of cul-3b, a novel hominine CUL-3 transcript variant. Asian J. Androl. 7: 205-211. http://dx.doi.org/10.1111/j.1745-7262.2005.00024.x Malodobra-Mazur M, Bednarska-Chabowska D, Olewinski R, Chmielecki Z, et al (2016). Single nucleotide polymorphisms in 5′-UTR of the SLC2A4 gene regulate solute carrier family 2 member 4 gene expression in visceral adipose tissue. Gene 576: 499-504. http://dx.doi.org/10.1016/j.gene.2015.10.067 Mymrikov EV, Seit-Nebi AS, Gusev NB, et al (2011). Large potentials of small heat shock proteins. Physiol. Rev. 91: 1123-1159. http://dx.doi.org/10.1152/physrev.00023.2010 Nagy S, Poczai P, Cernák I, Gorji AM, et al (2012). PICcalc: an online program to calculate polymorphic information content for molecular genetic studies. Biochem. Genet. 50: 670-672. http://dx.doi.org/10.1007/s10528-012-9509-1 Qiu Y, Lu H, Zhu JT, Chen XF, et al (2014). Characterization of novel EST-SSR markers and their correlations with growth and nacreous secretion traits in the pearl oyster Pinctada martensii (Dunker). Aquaculture 420: S92-S97. http://dx.doi.org/10.1016/j.aquaculture.2013.09.040 Ranjan S, Bhushan B, Panigrahi M, Kumar A, et al (2015). Association and expression analysis of single nucleotide polymorphisms of partial tumor necrosis factor alpha gene with mastitis in crossbred cattle. Anim. Biotechnol. 26: 98-104. http://dx.doi.org/10.1080/10495398.2014.929582 Seipp MT, Durtschi JD, Liew MA, Williams J, et al (2007). Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting. J. Mol. Diagn. 9: 284-289. http://dx.doi.org/10.2353/jmoldx.2007.060136 Shi Y, Wang S, Gu Z, Lv J, et al (2014). High-density single nucleotide polymorphisms linkage and quantitative trait locus mapping of the pearl oyster, Pinctada fucata martensii Dunker. Aquaculture 434: 376-384. http://dx.doi.org/10.1016/j.aquaculture.2014.08.044 Smith BL, Lu CP, Alvarado Bremer JR, et al (2010). High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies. Mol. Ecol. Resour. 10: 193-196. http://dx.doi.org/10.1111/j.1755-0998.2009.02726.x Sun Y, Yu X, Tong J, et al (2012). Polymorphisms in Myostatin Gene and associations with growth traits in the common carp (Cyprinus carpio L.). Int. J. Mol. Sci. 13: 14956-14961. http://dx.doi.org/10.3390/ijms131114956 Wada KT, Komaru A, et al (1996). Color and weight of pearls produced by grafting the mantle tissue from a selected population for white shell color of the Japanese pearl oyster Pinctada fucata martensii (Dunker). Aquaculture 142: 25-32. http://dx.doi.org/10.1016/0044-8486(95)01242-7 Wang J, Qi H, Li L, Zhang G, et al (2013). Two-step high-resolution melting method for SNP validation in the highly polymorphic Crassostrea gigas genome. Southwest Chin. J. Agr. Sci 26: 1699-1704. Wang J, Qi H, Li L, Que H, et al (2015). Discovery and validation of genic single nucleotide polymorphisms in the Pacific oyster Crassostrea gigas. Mol. Ecol. Resour. 15: 123-135. http://dx.doi.org/10.1111/1755-0998.12278 Wang X, Meng X, Song B, Qiu X, et al (2010). SNPs in the myostatin gene of the mollusk Chlamys farreri: association with growth traits. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 155: 327-330. http://dx.doi.org/10.1016/j.cbpb.2009.12.001 Xu Z, Tang L, Li Y, Ge J, et al (2016). Identification of SNPs in the 5′-flanking region and 3′-UTR of the MIH gene and their association with precocity of the Chinese mitten crab Eriocheir sinensis. Aquacult. Res. 47: 992-1000. http://dx.doi.org/10.1111/are.12559 Yeh FC, Yang R, Boyle TJ, Ye Z, et al. (2000). POPGENE 32, Microsoft windows based freeware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada. Yu DH, Chu KH, et al (2006). Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China. Aquaculture 258: 220-227. http://dx.doi.org/10.1016/j.aquaculture.2006.03.024 Zhang N, Ma Z, Zhang D, Guo H, et al (2015). Characterization of 25 single nucleotide polymorphism markers in the pearl oyster Pinctada martensii (Dunker). Conserv. Genet. Resour. 7: 831-835. http://dx.doi.org/10.1007/s12686-015-0503-x
S. G. Fan, Wei, J. F., Guo, Y. H., Huang, G. J., Yu, D. H., Fan, S. G., Wei, J. F., Guo, Y. H., Huang, G. J., Yu, D. H., Fan, S. G., Wei, J. F., Guo, Y. H., Huang, G. J., and Yu, D. H., Development of coding single nucleotide polymorphic markers in the pearl oyster Pinctada fucata based on next-generation sequencing and high-resolution melting analysis, vol. 15, no. 4, p. -, 2016.
The authors declare no conflict of interest. ACKNOWLEDGMENTS Research supported by the PhD Start-Up Fund of Natural Science Foundation of Guangdong Province (#2014A030310237), the Natural Science Foundation Program of Hainan Province (#20154180), the Basic Scientific Research Fund for the Central Institutes of Public Welfare (South China Sea Fisheries Research Institute, #2014TS08), the Special Fund for Marine Fisheries Research and Extension of Guangdong Province (#A201401A07, #Z2015010), the National Natural Science Foundation of China (#31372525), and the Earmarked Fund for China Agriculture Research System (#CARS-48). REFERENCES An XP, Song YX, Hou JX, Han P, et al (2015). Mutations in the MTHFR gene and their associations with milk production traits in dairy goats. Small Rumin. Res. 130: 76-80. http://dx.doi.org/10.1016/j.smallrumres.2015.06.008 Bayır M, Bayır A, Wright JM, et al (2015). Divergent spatial regulation of duplicated fatty acid-binding protein (fabp) genes in rainbow trout (Oncorhynchus mykiss). Comp. Biochem. Physiol. Part D Genomics Proteomics 14: 26-32. http://dx.doi.org/10.1016/j.cbd.2015.02.002 Bergstrom DE, Young M, Albrecht KH, Eicher EM, et al (2000). Related function of mouse SOX3, SOX9, and SRY HMG domains assayed by male sex determination. Genesis 28: 111-124. http://dx.doi.org/10.1002/1526-968X(200011/12)28:3/4<111::AID-GENE40>3.0.CO;2-5 Cenciarelli C, Chiaur DS, Guardavaccaro D, Parks W, et al (1999). Identification of a family of human F-box proteins. Curr. Biol. 9: 1177-1179. http://dx.doi.org/10.1016/S0960-9822(00)80020-2 Cui G, Zhang L, Xu Y, Cianflone K, et al (2013). Development of a high resolution melting method for genotyping of risk HLA-DQA1 and PLA2R1 alleles and ethnic distribution of these risk alleles. Gene 514: 125-130. http://dx.doi.org/10.1016/j.gene.2012.11.004 Gao L, Chen M, Chang Y, Ji N, et al (2013). Development of SNP markers associated with defense mechanism of sea cucumber, Apostichopus japonicas. Conserv. Genet. Resour. 5: 587-591. http://dx.doi.org/10.1007/s12686-013-9858-z Gao Q, Ju Z, Zhang Y, Huang J, et al (2014). Association of TNP2 gene polymorphisms of the bta-miR-154 target site with the semen quality traits of Chinese Holstein bulls. PLoS One 9: e84355. http://dx.doi.org/10.1371/journal.pone.0084355 Gomez-Uchida D, Seeb L, Warheit K, McKinney G, et al (2014). Deep sequencing of the transcriptome and mining of single nucleotide polymorphisms (SNPs) provide genomic resources for applied studies in Chinook salmon (Oncorhynchus tshawytscha). Conserv. Genet. Resour. 6: 807-811. http://dx.doi.org/10.1007/s12686-014-0235-3 Grabherr MG, Haas BJ, Yassour M, Levin JZ, et al (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29: 644-652. http://dx.doi.org/10.1038/nbt.1883 Guo L, Li L, Zhang S, Guo X, et al (2011). Novel polymorphisms in the myostatin gene and their association with growth traits in a variety of bay scallop, Argopecten irradians. Anim. Genet. 42: 339-340. http://dx.doi.org/10.1111/j.1365-2052.2011.02172.x Huang X, Wu S, Guan Y, Li Y, et al (2014a). Identification of sixteen single-nucleotide polymorphism markers in the pearl oyster, Pinctada fucata, for population genetic structure analysis. J. Genet. 93: e1-e4. Huang J, Zhang Y, Li J, Yu Z, et al (2014b). Development of SNP markers in Crassostrea hongkongensis based on the next-generation sequencing and high resolution melting analysis. Conserv. Genet. Resour. 6: 559-562. http://dx.doi.org/10.1007/s12686-014-0218-4 Jones DB, Jerry DR, Forêt S, Konovalov DA, et al (2013). Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Mar. Biotechnol. (NY) 15: 647-658. http://dx.doi.org/10.1007/s10126-013-9514-3 Kipreos ET, Pagano M, et al (2000). The F-box protein family. Genome Biol. 1: S3002. http://dx.doi.org/10.1186/gb-2000-1-5-reviews3002 Klinbunga S, Sittikankaew K, Jantee N, Prakopphet S, et al (2015). Expression levels of vitellogenin receptor (Vtgr) during ovarian development and association between its single nucleotide polymorphisms (SNPs) and reproduction-related parameters of the giant tiger shrimp Penaeus monodon. Aquaculture 435: 18-27. http://dx.doi.org/10.1016/j.aquaculture.2014.09.013 Li Y, Liu W, Lin J, He M, et al (2016). Development of SNP markers in Pinctada fucata and its application for family genetic analysis. Mar. Sci. Bull. 35: 96-102. Liu L, Yu X, Tong J, et al (2012). Molecular characterization of myostatin (MSTN) gene and association analysis with growth traits in the bighead carp (Aristichthys nobilis). Mol. Biol. Rep. 39: 9211-9221. http://dx.doi.org/10.1007/s11033-012-1794-6 Lu L, Zhou ZM, Huang XY, Xu M, et al (2005). Identification and characterization of cul-3b, a novel hominine CUL-3 transcript variant. Asian J. Androl. 7: 205-211. http://dx.doi.org/10.1111/j.1745-7262.2005.00024.x Malodobra-Mazur M, Bednarska-Chabowska D, Olewinski R, Chmielecki Z, et al (2016). Single nucleotide polymorphisms in 5′-UTR of the SLC2A4 gene regulate solute carrier family 2 member 4 gene expression in visceral adipose tissue. Gene 576: 499-504. http://dx.doi.org/10.1016/j.gene.2015.10.067 Mymrikov EV, Seit-Nebi AS, Gusev NB, et al (2011). Large potentials of small heat shock proteins. Physiol. Rev. 91: 1123-1159. http://dx.doi.org/10.1152/physrev.00023.2010 Nagy S, Poczai P, Cernák I, Gorji AM, et al (2012). PICcalc: an online program to calculate polymorphic information content for molecular genetic studies. Biochem. Genet. 50: 670-672. http://dx.doi.org/10.1007/s10528-012-9509-1 Qiu Y, Lu H, Zhu JT, Chen XF, et al (2014). Characterization of novel EST-SSR markers and their correlations with growth and nacreous secretion traits in the pearl oyster Pinctada martensii (Dunker). Aquaculture 420: S92-S97. http://dx.doi.org/10.1016/j.aquaculture.2013.09.040 Ranjan S, Bhushan B, Panigrahi M, Kumar A, et al (2015). Association and expression analysis of single nucleotide polymorphisms of partial tumor necrosis factor alpha gene with mastitis in crossbred cattle. Anim. Biotechnol. 26: 98-104. http://dx.doi.org/10.1080/10495398.2014.929582 Seipp MT, Durtschi JD, Liew MA, Williams J, et al (2007). Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting. J. Mol. Diagn. 9: 284-289. http://dx.doi.org/10.2353/jmoldx.2007.060136 Shi Y, Wang S, Gu Z, Lv J, et al (2014). High-density single nucleotide polymorphisms linkage and quantitative trait locus mapping of the pearl oyster, Pinctada fucata martensii Dunker. Aquaculture 434: 376-384. http://dx.doi.org/10.1016/j.aquaculture.2014.08.044 Smith BL, Lu CP, Alvarado Bremer JR, et al (2010). High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies. Mol. Ecol. Resour. 10: 193-196. http://dx.doi.org/10.1111/j.1755-0998.2009.02726.x Sun Y, Yu X, Tong J, et al (2012). Polymorphisms in Myostatin Gene and associations with growth traits in the common carp (Cyprinus carpio L.). Int. J. Mol. Sci. 13: 14956-14961. http://dx.doi.org/10.3390/ijms131114956 Wada KT, Komaru A, et al (1996). Color and weight of pearls produced by grafting the mantle tissue from a selected population for white shell color of the Japanese pearl oyster Pinctada fucata martensii (Dunker). Aquaculture 142: 25-32. http://dx.doi.org/10.1016/0044-8486(95)01242-7 Wang J, Qi H, Li L, Zhang G, et al (2013). Two-step high-resolution melting method for SNP validation in the highly polymorphic Crassostrea gigas genome. Southwest Chin. J. Agr. Sci 26: 1699-1704. Wang J, Qi H, Li L, Que H, et al (2015). Discovery and validation of genic single nucleotide polymorphisms in the Pacific oyster Crassostrea gigas. Mol. Ecol. Resour. 15: 123-135. http://dx.doi.org/10.1111/1755-0998.12278 Wang X, Meng X, Song B, Qiu X, et al (2010). SNPs in the myostatin gene of the mollusk Chlamys farreri: association with growth traits. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 155: 327-330. http://dx.doi.org/10.1016/j.cbpb.2009.12.001 Xu Z, Tang L, Li Y, Ge J, et al (2016). Identification of SNPs in the 5′-flanking region and 3′-UTR of the MIH gene and their association with precocity of the Chinese mitten crab Eriocheir sinensis. Aquacult. Res. 47: 992-1000. http://dx.doi.org/10.1111/are.12559 Yeh FC, Yang R, Boyle TJ, Ye Z, et al. (2000). POPGENE 32, Microsoft windows based freeware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada. Yu DH, Chu KH, et al (2006). Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China. Aquaculture 258: 220-227. http://dx.doi.org/10.1016/j.aquaculture.2006.03.024 Zhang N, Ma Z, Zhang D, Guo H, et al (2015). Characterization of 25 single nucleotide polymorphism markers in the pearl oyster Pinctada martensii (Dunker). Conserv. Genet. Resour. 7: 831-835. http://dx.doi.org/10.1007/s12686-015-0503-x
S. G. Fan, Wei, J. F., Guo, Y. H., Huang, G. J., Yu, D. H., Fan, S. G., Wei, J. F., Guo, Y. H., Huang, G. J., Yu, D. H., Fan, S. G., Wei, J. F., Guo, Y. H., Huang, G. J., and Yu, D. H., Development of coding single nucleotide polymorphic markers in the pearl oyster Pinctada fucata based on next-generation sequencing and high-resolution melting analysis, vol. 15, no. 4, p. -, 2016.
The authors declare no conflict of interest. ACKNOWLEDGMENTS Research supported by the PhD Start-Up Fund of Natural Science Foundation of Guangdong Province (#2014A030310237), the Natural Science Foundation Program of Hainan Province (#20154180), the Basic Scientific Research Fund for the Central Institutes of Public Welfare (South China Sea Fisheries Research Institute, #2014TS08), the Special Fund for Marine Fisheries Research and Extension of Guangdong Province (#A201401A07, #Z2015010), the National Natural Science Foundation of China (#31372525), and the Earmarked Fund for China Agriculture Research System (#CARS-48). REFERENCES An XP, Song YX, Hou JX, Han P, et al (2015). Mutations in the MTHFR gene and their associations with milk production traits in dairy goats. Small Rumin. Res. 130: 76-80. http://dx.doi.org/10.1016/j.smallrumres.2015.06.008 Bayır M, Bayır A, Wright JM, et al (2015). Divergent spatial regulation of duplicated fatty acid-binding protein (fabp) genes in rainbow trout (Oncorhynchus mykiss). Comp. Biochem. Physiol. Part D Genomics Proteomics 14: 26-32. http://dx.doi.org/10.1016/j.cbd.2015.02.002 Bergstrom DE, Young M, Albrecht KH, Eicher EM, et al (2000). Related function of mouse SOX3, SOX9, and SRY HMG domains assayed by male sex determination. Genesis 28: 111-124. http://dx.doi.org/10.1002/1526-968X(200011/12)28:3/4<111::AID-GENE40>3.0.CO;2-5 Cenciarelli C, Chiaur DS, Guardavaccaro D, Parks W, et al (1999). Identification of a family of human F-box proteins. Curr. Biol. 9: 1177-1179. http://dx.doi.org/10.1016/S0960-9822(00)80020-2 Cui G, Zhang L, Xu Y, Cianflone K, et al (2013). Development of a high resolution melting method for genotyping of risk HLA-DQA1 and PLA2R1 alleles and ethnic distribution of these risk alleles. Gene 514: 125-130. http://dx.doi.org/10.1016/j.gene.2012.11.004 Gao L, Chen M, Chang Y, Ji N, et al (2013). Development of SNP markers associated with defense mechanism of sea cucumber, Apostichopus japonicas. Conserv. Genet. Resour. 5: 587-591. http://dx.doi.org/10.1007/s12686-013-9858-z Gao Q, Ju Z, Zhang Y, Huang J, et al (2014). Association of TNP2 gene polymorphisms of the bta-miR-154 target site with the semen quality traits of Chinese Holstein bulls. PLoS One 9: e84355. http://dx.doi.org/10.1371/journal.pone.0084355 Gomez-Uchida D, Seeb L, Warheit K, McKinney G, et al (2014). Deep sequencing of the transcriptome and mining of single nucleotide polymorphisms (SNPs) provide genomic resources for applied studies in Chinook salmon (Oncorhynchus tshawytscha). Conserv. Genet. Resour. 6: 807-811. http://dx.doi.org/10.1007/s12686-014-0235-3 Grabherr MG, Haas BJ, Yassour M, Levin JZ, et al (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29: 644-652. http://dx.doi.org/10.1038/nbt.1883 Guo L, Li L, Zhang S, Guo X, et al (2011). Novel polymorphisms in the myostatin gene and their association with growth traits in a variety of bay scallop, Argopecten irradians. Anim. Genet. 42: 339-340. http://dx.doi.org/10.1111/j.1365-2052.2011.02172.x Huang X, Wu S, Guan Y, Li Y, et al (2014a). Identification of sixteen single-nucleotide polymorphism markers in the pearl oyster, Pinctada fucata, for population genetic structure analysis. J. Genet. 93: e1-e4. Huang J, Zhang Y, Li J, Yu Z, et al (2014b). Development of SNP markers in Crassostrea hongkongensis based on the next-generation sequencing and high resolution melting analysis. Conserv. Genet. Resour. 6: 559-562. http://dx.doi.org/10.1007/s12686-014-0218-4 Jones DB, Jerry DR, Forêt S, Konovalov DA, et al (2013). Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Mar. Biotechnol. (NY) 15: 647-658. http://dx.doi.org/10.1007/s10126-013-9514-3 Kipreos ET, Pagano M, et al (2000). The F-box protein family. Genome Biol. 1: S3002. http://dx.doi.org/10.1186/gb-2000-1-5-reviews3002 Klinbunga S, Sittikankaew K, Jantee N, Prakopphet S, et al (2015). Expression levels of vitellogenin receptor (Vtgr) during ovarian development and association between its single nucleotide polymorphisms (SNPs) and reproduction-related parameters of the giant tiger shrimp Penaeus monodon. Aquaculture 435: 18-27. http://dx.doi.org/10.1016/j.aquaculture.2014.09.013 Li Y, Liu W, Lin J, He M, et al (2016). Development of SNP markers in Pinctada fucata and its application for family genetic analysis. Mar. Sci. Bull. 35: 96-102. Liu L, Yu X, Tong J, et al (2012). Molecular characterization of myostatin (MSTN) gene and association analysis with growth traits in the bighead carp (Aristichthys nobilis). Mol. Biol. Rep. 39: 9211-9221. http://dx.doi.org/10.1007/s11033-012-1794-6 Lu L, Zhou ZM, Huang XY, Xu M, et al (2005). Identification and characterization of cul-3b, a novel hominine CUL-3 transcript variant. Asian J. Androl. 7: 205-211. http://dx.doi.org/10.1111/j.1745-7262.2005.00024.x Malodobra-Mazur M, Bednarska-Chabowska D, Olewinski R, Chmielecki Z, et al (2016). Single nucleotide polymorphisms in 5′-UTR of the SLC2A4 gene regulate solute carrier family 2 member 4 gene expression in visceral adipose tissue. Gene 576: 499-504. http://dx.doi.org/10.1016/j.gene.2015.10.067 Mymrikov EV, Seit-Nebi AS, Gusev NB, et al (2011). Large potentials of small heat shock proteins. Physiol. Rev. 91: 1123-1159. http://dx.doi.org/10.1152/physrev.00023.2010 Nagy S, Poczai P, Cernák I, Gorji AM, et al (2012). PICcalc: an online program to calculate polymorphic information content for molecular genetic studies. Biochem. Genet. 50: 670-672. http://dx.doi.org/10.1007/s10528-012-9509-1 Qiu Y, Lu H, Zhu JT, Chen XF, et al (2014). Characterization of novel EST-SSR markers and their correlations with growth and nacreous secretion traits in the pearl oyster Pinctada martensii (Dunker). Aquaculture 420: S92-S97. http://dx.doi.org/10.1016/j.aquaculture.2013.09.040 Ranjan S, Bhushan B, Panigrahi M, Kumar A, et al (2015). Association and expression analysis of single nucleotide polymorphisms of partial tumor necrosis factor alpha gene with mastitis in crossbred cattle. Anim. Biotechnol. 26: 98-104. http://dx.doi.org/10.1080/10495398.2014.929582 Seipp MT, Durtschi JD, Liew MA, Williams J, et al (2007). Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting. J. Mol. Diagn. 9: 284-289. http://dx.doi.org/10.2353/jmoldx.2007.060136 Shi Y, Wang S, Gu Z, Lv J, et al (2014). High-density single nucleotide polymorphisms linkage and quantitative trait locus mapping of the pearl oyster, Pinctada fucata martensii Dunker. Aquaculture 434: 376-384. http://dx.doi.org/10.1016/j.aquaculture.2014.08.044 Smith BL, Lu CP, Alvarado Bremer JR, et al (2010). High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies. Mol. Ecol. Resour. 10: 193-196. http://dx.doi.org/10.1111/j.1755-0998.2009.02726.x Sun Y, Yu X, Tong J, et al (2012). Polymorphisms in Myostatin Gene and associations with growth traits in the common carp (Cyprinus carpio L.). Int. J. Mol. Sci. 13: 14956-14961. http://dx.doi.org/10.3390/ijms131114956 Wada KT, Komaru A, et al (1996). Color and weight of pearls produced by grafting the mantle tissue from a selected population for white shell color of the Japanese pearl oyster Pinctada fucata martensii (Dunker). Aquaculture 142: 25-32. http://dx.doi.org/10.1016/0044-8486(95)01242-7 Wang J, Qi H, Li L, Zhang G, et al (2013). Two-step high-resolution melting method for SNP validation in the highly polymorphic Crassostrea gigas genome. Southwest Chin. J. Agr. Sci 26: 1699-1704. Wang J, Qi H, Li L, Que H, et al (2015). Discovery and validation of genic single nucleotide polymorphisms in the Pacific oyster Crassostrea gigas. Mol. Ecol. Resour. 15: 123-135. http://dx.doi.org/10.1111/1755-0998.12278 Wang X, Meng X, Song B, Qiu X, et al (2010). SNPs in the myostatin gene of the mollusk Chlamys farreri: association with growth traits. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 155: 327-330. http://dx.doi.org/10.1016/j.cbpb.2009.12.001 Xu Z, Tang L, Li Y, Ge J, et al (2016). Identification of SNPs in the 5′-flanking region and 3′-UTR of the MIH gene and their association with precocity of the Chinese mitten crab Eriocheir sinensis. Aquacult. Res. 47: 992-1000. http://dx.doi.org/10.1111/are.12559 Yeh FC, Yang R, Boyle TJ, Ye Z, et al. (2000). POPGENE 32, Microsoft windows based freeware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada. Yu DH, Chu KH, et al (2006). Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China. Aquaculture 258: 220-227. http://dx.doi.org/10.1016/j.aquaculture.2006.03.024 Zhang N, Ma Z, Zhang D, Guo H, et al (2015). Characterization of 25 single nucleotide polymorphism markers in the pearl oyster Pinctada martensii (Dunker). Conserv. Genet. Resour. 7: 831-835. http://dx.doi.org/10.1007/s12686-015-0503-x
S. G. Fan, Wang, J. X., Zhang, D. L., Guo, Y. H., Yu, D. H., Fan, S. G., Wang, J. X., Zhang, D. L., Guo, Y. H., and Yu, D. H., Identification of 15 novel polymorphic microsatellite loci in pearl oyster (Pinctada fucata), vol. 15, p. -, 2016.
S. G. Fan, Wang, J. X., Zhang, D. L., Guo, Y. H., Yu, D. H., Fan, S. G., Wang, J. X., Zhang, D. L., Guo, Y. H., and Yu, D. H., Identification of 15 novel polymorphic microsatellite loci in pearl oyster (Pinctada fucata), vol. 15, p. -, 2016.