Publications

Found 8 results
Filters: Author is A.W. Gichira  [Clear All Filters]
2016
Z. C. Long, Gichira, A. W., Chen, J. M., Wang, Q. F., Liao, K., and A, Development of EST-SSR markers in the relict tree Davidia involucrata (Davidiaceae) using transcriptome sequencing, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interestACKNOWLEDGMENTSWe thank Zhi-Yuan Du, Le-Na Li, and Hua Liu for their help in the laboratory. Research supported by grants from the National Natural Science Foundation of China (#31200170 and #31570220). REFERENCESChen JM, Zhao SY, Liao YY, Gichira AW, et al (2015). Chloroplast DNA phylogeographic analysis reveals significant spatial genetic structure of the relictual tree Davidia involucrata (Davidiaceae). Conserv. Genet. 16: 583-593. http://dx.doi.org/10.1007/s10592-014-0683-z Chen Z, Xue C, Zhu S, Zho F, et al (2005). GoPipe: streamlined gene ontology annotation for batch anonymous sequences with statistics. Prog. Biochem. Biophys. 32: 187-191. Du YJ, Dai QY, Zhang LY, Qiu YX, et al (2012). Development of microsatellite markers for the dove tree, Davidia involucrata (Nyssaceae), a rare endemic from China. Am. J. Bot. 99: e206-e209. http://dx.doi.org/10.3732/ajb.1100507 Fu LK and Jin JM (1992). China plant red data book - rare and endangered plants. Vol. 1. Science Press, Beijing. Grabherr MG, Haas BJ, Yassour M, Levin JZ, et al (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29: 644-652. http://dx.doi.org/10.1038/nbt.1883 Kanehisa M, Goto S, Furumichi M, Tanabe M, et al (2010). KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38: D355-D360. http://dx.doi.org/10.1093/nar/gkp896 Li XP, Li ZL, He CL, Zhu WY, et al (2012a). Genetic diversity of the endangered Davidia involucrata by AFLP analysis. Acta Hort. Sin. 39: 992-998. Li Z, Wang C, Liu Y, Li J, et al (2012b). Microsatellite primers in the Chinese dove tree, Davidia involucrata (Cornaceae), a relic species of the Tertiary. Am. J. Bot. 99: e78-e80. http://dx.doi.org/10.3732/ajb.1100365 Luo S, He Y, Ning G, Zhang J, et al (2011). Genetic diversity and genetic structure of different populations of the endangered species Davidia involucrata in China detected by inter-simple sequence repeat analysis. Trees 25: 1063-1071. http://dx.doi.org/10.1007/s00468-011-0581-7 Ma Q, Du YJ, Chen N, Zhang LY, et al (2015). Phylogeography of Davidia involucrata (Davidiaceae) inferred from cpDNA haplotypes and nSSR data. Syst. Bot. 40: 796-810. http://dx.doi.org/10.1600/036364415X689267 Manchester SR, et al (2002). Leaves and fruits of Davidia (Cornales) from the Paleocene of North America. Syst. Bot. 27: 368-382. Ng P, Wei CL, Sung WK, Chiu KP, et al (2005). Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat. Methods 2: 105-111. http://dx.doi.org/10.1038/nmeth733 Peakall R, Smouse PE, et al (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics 28: 2537-2539. http://dx.doi.org/10.1093/bioinformatics/bts460 Peng YL, Hu YQ, Sun H, et al (2003). Allozyme analysis of Davidia involucrata var. vilmoriniana and its biogeography significance Acta Bot. Yunnanica 25: 55-62. Rice P, Longden I, Bleasby A, et al (2000). EMBOSS: the European molecular biology open software suite. Trends Genet. 16: 276-277. http://dx.doi.org/10.1016/S0168-9525(00)02024-2 Rozen S, Skaletsky H, et al (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386. Song CW, Bao MZ, et al (2004). Study on genetic diversity of RAPD mark for natural Davidia involucrata population. Sci. Silvae Sin. 40: 75-79. Tang CQ, Ohsawa M, et al (2002). Tertiary relic deciduous forests on a humid subtropical mountain, Mt. Emei, Sichuan, China. Folia Geobot. 37: 93-106. http://dx.doi.org/10.1007/BF02803193 Tao C, Yang Z, Lu R, Liu T, et al (2012). Microsatellite markers for the relictual dove tree, Davidia involucrata (Cornaceae). Am. J. Bot. 99: e108-e110. http://dx.doi.org/10.3732/ajb.1100414 Wu J, Cai C, Cheng F, Cui H, et al (2014). Characterisation and development of EST-SSR markers in tree peony using transcriptome sequences. Mol. Breed. 34: 1853-1866. http://dx.doi.org/10.1007/s11032-014-0144-x You H, Fujiwara K, Liu Y, et al (2014). A preliminary vegetation-ecological study of Davidia involucrata forest. Nat. Sci. 6: 1012-1029. Zhang J, Ma W, Song X, Lin Q, et al (2014). Characterization and development of EST-SSR markers derived from transcriptome of yellow catfish. Molecules 19: 16402-16415. http://dx.doi.org/10.3390/molecules191016402  
A. W. Gichira, Long, Z. C., Wang, Q. F., Chen, J. M., Liao, K., Gichira, A. W., Long, Z. C., Wang, Q. F., Chen, J. M., and Liao, K., Development of expressed sequence tag-based microsatellite markers for the critically endangered Isoëtes sinensis (Isoetaceae) based on transcriptome analysis, vol. 15, p. -, 2016.
A. W. Gichira, Long, Z. C., Wang, Q. F., Chen, J. M., Liao, K., Gichira, A. W., Long, Z. C., Wang, Q. F., Chen, J. M., and Liao, K., Development of expressed sequence tag-based microsatellite markers for the critically endangered Isoëtes sinensis (Isoetaceae) based on transcriptome analysis, vol. 15, p. -, 2016.
A. W. Gichira, Long, Z. C., Hu, G. W., Gituru, R. W., Wang, Q. F., Chen, J. M., Gichira, A. W., Long, Z. C., Hu, G. W., Gituru, R. W., Wang, Q. F., and Chen, J. M., Development of microsatellite markers in Hagenia abyssinica (Bruce) J.F. Gmel, an endangered tropical tree of eastern Africa, using next-generation sequencing, vol. 15, p. -, 2016.
A. W. Gichira, Long, Z. C., Hu, G. W., Gituru, R. W., Wang, Q. F., Chen, J. M., Gichira, A. W., Long, Z. C., Hu, G. W., Gituru, R. W., Wang, Q. F., and Chen, J. M., Development of microsatellite markers in Hagenia abyssinica (Bruce) J.F. Gmel, an endangered tropical tree of eastern Africa, using next-generation sequencing, vol. 15, p. -, 2016.
X. Y. Yang, Long, Z. C., Gichira, A. W., Guo, Y. H., Wang, Q. F., Chen, J. M., Yang, X. Y., Long, Z. C., Gichira, A. W., Guo, Y. H., Wang, Q. F., and Chen, J. M., Development of microsatellite markers in the tetraploid fern Ceratopteris thalictroides (Parkeriaceae) using RAD tag sequencing, vol. 15, p. -, 2016.
X. Y. Yang, Long, Z. C., Gichira, A. W., Guo, Y. H., Wang, Q. F., Chen, J. M., Yang, X. Y., Long, Z. C., Gichira, A. W., Guo, Y. H., Wang, Q. F., and Chen, J. M., Development of microsatellite markers in the tetraploid fern Ceratopteris thalictroides (Parkeriaceae) using RAD tag sequencing, vol. 15, p. -, 2016.