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2016
deAzevêdo J. Silva, Lima, S. C., Addobbati, C., Moura, R., Brandão, L. A. Cavalcanti, Pancoto, J. A. Trés, Donadi, E. A., Crovella, S., and Sandrin-Garcia, P., Association of interferon-induced helicase C domain (IFIH1) gene polymorphisms with systemic lupus erythematosus and a relevant updated meta-analysis, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSResearch supported by the following Brazilian funding agencies: CAPES (Coordenação de Aperfeiçoamento de Pessoal de Nível Superior), CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico), FAPESP (Fundação Amparo à Pesquisa do Estado de São Paulo), and FACEPE (Fundação de Amparo à Ciência e Tecnologia de Pernambuco). REFERENCESBarrett JC, Fry B, Maller J, Daly MJ, et al (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265. http://dx.doi.org/10.1093/bioinformatics/bth457 Cen H, Leng RX, Wang W, Zhou M, et al (2013a). Association study of IFIH1 rs1990760 polymorphism with systemic lupus erythematosus in a Chinese population. Inflammation 36: 444-448. http://dx.doi.org/10.1007/s10753-012-9564-0 Cen H, Wang W, Leng RX, Wang TY, et al (2013b). Association of IFIH1 rs1990760 polymorphism with susceptibility to autoimmune diseases: a meta-analysis. Autoimmunity 46: 455-462. http://dx.doi.org/10.3109/08916934.2013.796937 Chistiakov DA, et al (2010). Interferon induced with helicase C domain 1 (IFIH1) and virus-induced autoimmunity: a review. Viral Immunol. 23: 3-15. http://dx.doi.org/10.1089/vim.2009.0071 Choubey D, et al (2012). Interferon-inducible Ifi200-family genes as modifiers of lupus susceptibility. Immunol. Lett. 147: 10-17. http://dx.doi.org/10.1016/j.imlet.2012.07.003 Crampton SP, Deane JA, Feigenbaum L, Bolland S, et al (2012). Ifih1 gene dose effect reveals MDA5-mediated chronic type I IFN gene signature, viral resistance, and accelerated autoimmunity. J. Immunol. 188: 1451-1459. http://dx.doi.org/10.4049/jimmunol.1102705 Cunninghame Graham DS, Morris DL, Bhangale TR, Criswell LA, et al (2011). Association of NCF2, IKZF1, IRF8, IFIH1, and TYK2 with systemic lupus erythematosus. PLoS Genet. 7: e1002341. http://dx.doi.org/10.1371/journal.pgen.1002341 Enevold C, Kjær L, Nielsen CH, Voss A, et al (2014). Genetic polymorphisms of dsRNA ligating pattern recognition receptors TLR3, MDA5, and RIG-I. Association with systemic lupus erythematosus and clinical phenotypes. Rheumatol. Int. 34: 1401-1408. http://dx.doi.org/10.1007/s00296-014-3012-4 Faul F, Erdfelder E, Buchner A, Lang A-G, et al (2009). Statistical power analyses using G*Power 3.1: tests for correlation and regression analyses. Behav. Res. Methods 41: 1149-1160. http://dx.doi.org/10.3758/BRM.41.4.1149 Gateva V, Sandling JK, Hom G, Taylor KE, et al (2009). A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus. Nat. Genet. 41: 1228-1233. http://dx.doi.org/10.1038/ng.468 Gono T, Kawaguchi Y, Sugiura T, Furuya T, et al (2010). Interferon-induced helicase (IFIH1) polymorphism with systemic lupus erythematosus and dermatomyositis/polymyositis. Mod. Rheumatol. 20: 466-470. http://dx.doi.org/10.3109/s10165-010-0311-9 González JR, Armengol L, Solé X, Guinó E, et al (2007). SNPassoc: an R package to perform whole genome association studies. Bioinformatics 23: 644-645. http://dx.doi.org/10.1093/bioinformatics/btm025 Guerra SG, Vyse TJ, Cunninghame Graham DS, et al (2012). The genetics of lupus: a functional perspective. Arthritis Res. Ther. 14: 211. http://dx.doi.org/10.1186/ar3844 James JA, Kaufman KM, Farris AD, Taylor-Albert E, et al (1997). An increased prevalence of Epstein-Barr virus infection in young patients suggests a possible etiology for systemic lupus erythematosus. J. Clin. Invest. 100: 3019-3026. http://dx.doi.org/10.1172/JCI119856 Lenert P, et al (2010). Nucleic acid sensing receptors in systemic lupus erythematosus: development of novel DNA- and/or RNA-like analogues for treating lupus. Clin. Exp. Immunol. 161: 208-222. McClain MT, Heinlen LD, Dennis GJ, Roebuck J, et al (2005). Early events in lupus humoral autoimmunity suggest initiation through molecular mimicry. Nat. Med. 11: 85-89. http://dx.doi.org/10.1038/nm1167 Molineros JE, Maiti AK, Sun C, Looger LL, BIOLUPUS Networket al (2013). Admixture mapping in lupus identifies multiple functional variants within IFIH1 associated with apoptosis, inflammation, and autoantibody production. PLoS Genet. 9: e1003222. http://dx.doi.org/10.1371/journal.pgen.1003222 Moura R, Araujo J, Guimarães R, Crovella S, et al (2013). Interferon induced with helicase C domain 1 (IFIH1): trends on helicase domain and type 1 diabetes onset. Gene 516: 66-68. http://dx.doi.org/10.1016/j.gene.2012.11.066 Robinson T, Kariuki SN, Franek BS, Kumabe M, et al (2011). Autoimmune disease risk variant of IFIH1 is associated with increased sensitivity to IFN-α and serologic autoimmunity in lupus patients. J. Immunol. 187: 1298-1303. http://dx.doi.org/10.4049/jimmunol.1100857 Sambrook J, Fritch EF and Maniatis T (1989). Molecular cloning: A laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, New York. Harley JB, Alarcón-Riquelme ME, Criswell LA, Jacob CO, International Consortium for Systemic Lupus Erythematosus Genetics (SLEGEN)et al (2008). Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. Nat. Genet. 40: 204-210. http://dx.doi.org/10.1038/ng.81 Smyth DJ, Cooper JD, Bailey R, Field S, et al (2006). A genome-wide association study of nonsynonymous SNPs identifies a type 1 diabetes locus in the interferon-induced helicase (IFIH1) region. Nat. Genet. 38: 617-619. http://dx.doi.org/10.1038/ng1800 Stathopoulou EA, Routsias JG, Stea EA, Moutsopoulos HM, et al (2005). Cross-reaction between antibodies to the major epitope of Ro60 kD autoantigen and a homologous peptide of Coxsackie virus 2B protein. Clin. Exp. Immunol. 141: 148-154. http://dx.doi.org/10.1111/j.1365-2249.2005.02812.x Sutherland A, Davies J, Owen CJ, Vaikkakara S, et al (2007). Genomic polymorphism at the interferon-induced helicase (IFIH1) locus contributes to Graves’ disease susceptibility. J. Clin. Endocrinol. Metab. 92: 3338-3341. http://dx.doi.org/10.1210/jc.2007-0173 Tsokos GC, et al (2011). Systemic lupus erythematosus. N. Engl. J. Med. 365: 2110-2121. http://dx.doi.org/10.1056/NEJMra1100359 Viechtbauer W, et al (2010). Conducting meta-analyses in R with the metafor package. J. Stat. Softw. 36: 1-46. http://dx.doi.org/10.18637/jss.v036.i03 Wang C, Ahlford A, Laxman N, Nordmark G, et al (2013). Contribution of IKBKE and IFIH1 gene variants to SLE susceptibility. Genes Immun. 14: 217-222. http://dx.doi.org/10.1038/gene.2013.9 Zahn S, Barchet W, Rehkämper C, Hornung T, et al (2011). Enhanced skin expression of melanoma differentiation-associated gene 5 (MDA5) in dermatomyositis and related autoimmune diseases. J. Am. Acad. Dermatol. 64: 988-989. http://dx.doi.org/10.1016/j.jaad.2010.08.004 Zhao ZF, Cui B, Chen HY, Wang S, et al (2007). The A946T polymorphism in the interferon induced helicase gene does not confer susceptibility to Graves’ disease in Chinese population. Endocrine 32: 143-147. http://dx.doi.org/10.1007/s12020-007-9024-z  
D. G. Ferreira, Lima, S. C., Frantine-Silva, W., Silva, J. F., Apolinário-Silva, C., Sofia, S. H., Carvalho, S., Galindo, B. A., Ferreira, D. G., Lima, S. C., Frantine-Silva, W., Silva, J. F., Apolinário-Silva, C., Sofia, S. H., Carvalho, S., and Galindo, B. A., Fine-scale genetic structure patterns in two freshwater fish species, Geophagus brasiliensis (Osteichthyes, Cichlidae) and Astyanax altiparanae (Osteichthyes, Characidae) throughout a Neotropical stream, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSAuthors are grateful to the Araucaria Foundation for financial support; to the Coordination for the Improvement of Higher Education Personnel (CAPES) for the scholarship awarded to D.G. Ferreira and S.C. Lima; to Dr. Oscar Akio Shibatta (State University of Londrina) for their help in identifying the species studied, and to Instituto Ambiental do Paraná (IAP) for permission to collect samples. REFERENCESAgostinho AA, Pelicice FM, Gomes LC, et al (2008). Dams and the fish fauna of the Neotropical region: impacts and management related to diversity and fisheries. Braz. J. Biol. 68 (Suppl): 1119-1132. http://dx.doi.org/10.1590/S1519-69842008000500019 Bardakci F, Skibinski DOF, et al (1994). Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity (Edinb) 73: 117-123. http://dx.doi.org/10.1038/hdy.1994.110 Boulton AJ, Boyero L and Covich AP Dobson, et al. (2008). Are tropical streams ecologically different from temperate streams? In: Tropical stream ecology (Dudgeon D, ed.). Academic Press, Hong Kong, 257-284. Carlsson J, Olsen HK, Nilsson J, Overli O, et al (1999). Microsatellites reveal fine-scale genetic structure in streamliving brown trout. J. Fish Biol. 55: 1290-1303. http://dx.doi.org/10.1111/j.1095-8649.1999.tb02076.x Castro RMC, Casatti L, Santos HF, Ferreira KM, et al (2003). Estrutura e composição da ictiofauna de riachos do Rio Paranapanema, sudeste do Brasil. Biota Neotrop. 3: 1-31. http://dx.doi.org/10.1590/S1676-06032003000100007 Coelho ASG (2001). Software: Dboot - Avaliação de dendrogramas baseados em estimativas de distâncias/similaridades genéticas através do procedimento de bootstrap. Versão 3.0. Universidade Federal de Goiás, Goiânia. Costa ADA, Ferreira DG, Silva WF, Zanatta AS, et al (2013). Fishes (Osteichthyes: Actinopterygii) from the Penacho stream, upper Paraná River basin, Paraná State, Brazil. Check List 9: 519-523. http://dx.doi.org/10.15560/9.3.519 Earl DA, VonHoldt BM, et al (2011). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. http://dx.doi.org/10.1007/s12686-011-9548-7 Esteves KE, Aranha JMR, et al (1999). Ecologia de Peixes de Riachos: Estado Atual e Perspectivas. Oecol. Bras. 6: 157-182. Evanno G, Regnaut S, Goudet J, et al (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x Excoffier L, Laval G, Schneider S, et al (2007). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. Ferreira DG, Galindo BA, Alves AN, Almeida FS, et al (2013). Development and characterization of 14 microsatellite loci in the Neotropical fish Geophagus brasiliensis (Perciformes, Cichlidae). J. Fish Biol. 83: 1430-1438. http://dx.doi.org/10.1111/jfb.12227 Ferreira DG, Galindo BA, Frantine-Silva W, Almeida FS, et al (2015). Genetic structure of a Neotropical sedentary fish revealed by AFLP, microsatellite and mtDNA markers: a case study. Conserv. Genet. 16: 151-166. http://dx.doi.org/10.1007/s10592-014-0648-2 Frantine-Silva W, Ferreira DG, Nascimento RHC, Fracasso JF, et al (2015). Genetic analysis of five sedentary fish species in middle Laranjinha River (upper Paraná River basin): A case study. Genet. Mol. Res. 14: 18637-18649. http://dx.doi.org/10.4238/2015.December.28.13 Garcez R, Calcagnotto D, Almeida-Toledo LF, et al (2011). Population structure of the migratory fish Prochilodus lineatus (Characiformes) from Rio Grande basin (Brazil), an area fragmented by dams. Aquat. Conserv. 21: 268-275. http://dx.doi.org/10.1002/aqc.1176 Garutti V, et al (1988). Distribuição longitudinal da ictiofauna de um córrego na região noroeste do Estado de São Paulo, Bacia do Rio Paraná. Rev. Bras. Biol. 48: 747-759. Geist J, et al (2011). Integrative freshwater ecology and biodiversity conservation. Ecol. Indic. 11: 1507-1516. http://dx.doi.org/10.1016/j.ecolind.2011.04.002 Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices, version 2.9.3. Available at [www.unil.ch/izea/softwares/fstat.html]. Accessed September 10, 2015. Hughes JM, Schmidt DJ, Finn DS, et al (2009). Genes in streams: using DNA to understand the movement of freshwater fauna and their riverine habitat. Bioscience 59: 573-583. http://dx.doi.org/10.1525/bio.2009.59.7.8 Kimura M, Weiss GH, et al (1964). Stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49: 561-576. Kullander SO (2003). Check list of the freshwater fishes of South and Central America. Family Cichlidae (Cichlids). EDIPUCRS, Porto Alegre, 605-654. Leuzzi SMP, Almeida FS, Orsi ML, Sodré LMK, et al (2004). Analysis by RAPD of the genetic structure of Astyanax altiparanae (Pisces, Characiformes) in reservoirs on the Paranapanema River, Brazil. Genet. Mol. Biol. 27: 355-362. http://dx.doi.org/10.1590/S1415-47572004000300009 Luiz EA, Agostinho AA, Gomes LC, Hahn NS, et al (1998). Ecologia trófica de peixes em dois riachos da bacia do Rio Paraná. Rev. Bras. Biol. 58: 273-285. Miller MP (1997). Tools for population genetic analyses (TFPGA) 1.3: a Windows program for the analysis of allozyme and molecular population genetic data, version 1.3. Computer software distributed by the author. Moysés CB, Almeida-Toledo LFD, et al (2002). Restriction fragment length polymorphisms of mitochondrial DNA among five freshwater fish species of the genus Astyanax (Pisces, Characidae). Genet. Mol. Biol. 25: 401-407. http://dx.doi.org/10.1590/S1415-47572002000400008 Paiva SR, Dergam JA, Machado F, et al (2006). Determining management units in southeastern Brazil: the case of Astyanax bimaculatus (Linnaeus, 1758) (Teleostei: Ostariophysi: Characidae). Hydrobiologia 560: 393-404. http://dx.doi.org/10.1007/s10750-005-9415-1 Pamponet VCC, Carneiro PLS, Affonso PRAM, Miranda VS, et al (2008). A multi-approach analysis of the genetic diversity in populations of Astyanax aff. bimaculatus Linnaeus, 1758 (Teleostei: Characidae) from Northeastern Brazil. Neotrop. Ichthyol. 6: 621-630. http://dx.doi.org/10.1590/S1679-62252008000400010 Piry S, Luikart G, Cornuet JM, et al (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90: 502-503. http://dx.doi.org/10.1093/jhered/90.4.502 Prioli SM, Prioli AJ, Júlio HFJrPavanelliCS, et al (2002). Identification of Astyanax altiparanae (Teleostei, Characidae) in the Iguaçu River, Brazil, based on mitochondrial DNA and RAPD markers. Genet. Mol. Biol. 25: 421-430. http://dx.doi.org/10.1590/S1415-47572002000400011 Pritchard JK, Stephens M, Donnelly P, et al (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. Raymond M, Rousset M, et al (1995). Genepop (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249. Schuelke M, et al (2000). An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18: 233-234. http://dx.doi.org/10.1038/72708 Sofia SH, Silva CRM, Galindo BA, Almeida FS, et al (2006). Population Genetic Structure of Astyanax scabripinnis (Teleostei, Characidae) from an Urban Stream. Hydrobiologia 553: 245-254. http://dx.doi.org/10.1007/s10750-005-1106-4 Sofia SH, Galindo BA, Paula FM, Sodré LMK, et al (2008). Genetic diversity of Hypostomus ancistroides (Teleostei, Loricariidae) from an urban stream. Genet. Mol. Biol. 1: 317-323. http://dx.doi.org/10.1590/S1415-47572008000200027 Suzuki HI, Pelicice FM, Luiz EA, Latini JD, et al. (2002). A planície alagável do rio Paraná: estrutura e processos ambientais. In: Estratégias reprodutivas da assembléia de peixes da planície de inundação do alto rio Paraná (Agostinho AA, Thomaz SM, Nakatani K, eds.). Pesquisas Ecológicas de Longa Duração, UEM, Maringá, 113-116. Vrijenhoek RC, et al (1998). Conservation genetics of freshwater fish. J. Fish Biol. 53: 394-412. http://dx.doi.org/10.1111/j.1095-8649.1998.tb01039.x Wilson GA, Rannala B, et al (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191. Winemiller KO, Agostinho AA and Caramaschi ÉP (2008). Fish ecology in tropical streams. In: Tropical stream ecology (Dudgeon D, ed.). Academic Press, Amsterdam, 107-146. Yeh FC, Yang R, Boyle TJ and Xiyan JM (2000). Pop Gene 32. Microsoft window-based freeware for population genetic analysis, v.1.32. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton. Zaganini RL, Hashimoto DT, Pereira LHG, Oliveira C, et al (2012). Isolation and characterization of microsatellite loci in the Neotropical fish Astyanax altiparanae (Teleostei: Characiformes) and cross-species amplification. J. Genet. 91: e24-e27.  
D. G. Ferreira, Lima, S. C., Frantine-Silva, W., Silva, J. F., Apolinário-Silva, C., Sofia, S. H., Carvalho, S., Galindo, B. A., Ferreira, D. G., Lima, S. C., Frantine-Silva, W., Silva, J. F., Apolinário-Silva, C., Sofia, S. H., Carvalho, S., and Galindo, B. A., Fine-scale genetic structure patterns in two freshwater fish species, Geophagus brasiliensis (Osteichthyes, Cichlidae) and Astyanax altiparanae (Osteichthyes, Characidae) throughout a Neotropical stream, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSAuthors are grateful to the Araucaria Foundation for financial support; to the Coordination for the Improvement of Higher Education Personnel (CAPES) for the scholarship awarded to D.G. Ferreira and S.C. Lima; to Dr. Oscar Akio Shibatta (State University of Londrina) for their help in identifying the species studied, and to Instituto Ambiental do Paraná (IAP) for permission to collect samples. REFERENCESAgostinho AA, Pelicice FM, Gomes LC, et al (2008). Dams and the fish fauna of the Neotropical region: impacts and management related to diversity and fisheries. Braz. J. Biol. 68 (Suppl): 1119-1132. http://dx.doi.org/10.1590/S1519-69842008000500019 Bardakci F, Skibinski DOF, et al (1994). Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity (Edinb) 73: 117-123. http://dx.doi.org/10.1038/hdy.1994.110 Boulton AJ, Boyero L and Covich AP Dobson, et al. (2008). Are tropical streams ecologically different from temperate streams? In: Tropical stream ecology (Dudgeon D, ed.). Academic Press, Hong Kong, 257-284. Carlsson J, Olsen HK, Nilsson J, Overli O, et al (1999). Microsatellites reveal fine-scale genetic structure in streamliving brown trout. J. Fish Biol. 55: 1290-1303. http://dx.doi.org/10.1111/j.1095-8649.1999.tb02076.x Castro RMC, Casatti L, Santos HF, Ferreira KM, et al (2003). Estrutura e composição da ictiofauna de riachos do Rio Paranapanema, sudeste do Brasil. Biota Neotrop. 3: 1-31. http://dx.doi.org/10.1590/S1676-06032003000100007 Coelho ASG (2001). Software: Dboot - Avaliação de dendrogramas baseados em estimativas de distâncias/similaridades genéticas através do procedimento de bootstrap. Versão 3.0. Universidade Federal de Goiás, Goiânia. Costa ADA, Ferreira DG, Silva WF, Zanatta AS, et al (2013). Fishes (Osteichthyes: Actinopterygii) from the Penacho stream, upper Paraná River basin, Paraná State, Brazil. Check List 9: 519-523. http://dx.doi.org/10.15560/9.3.519 Earl DA, VonHoldt BM, et al (2011). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. http://dx.doi.org/10.1007/s12686-011-9548-7 Esteves KE, Aranha JMR, et al (1999). Ecologia de Peixes de Riachos: Estado Atual e Perspectivas. Oecol. Bras. 6: 157-182. Evanno G, Regnaut S, Goudet J, et al (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x Excoffier L, Laval G, Schneider S, et al (2007). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. Ferreira DG, Galindo BA, Alves AN, Almeida FS, et al (2013). Development and characterization of 14 microsatellite loci in the Neotropical fish Geophagus brasiliensis (Perciformes, Cichlidae). J. Fish Biol. 83: 1430-1438. http://dx.doi.org/10.1111/jfb.12227 Ferreira DG, Galindo BA, Frantine-Silva W, Almeida FS, et al (2015). Genetic structure of a Neotropical sedentary fish revealed by AFLP, microsatellite and mtDNA markers: a case study. Conserv. Genet. 16: 151-166. http://dx.doi.org/10.1007/s10592-014-0648-2 Frantine-Silva W, Ferreira DG, Nascimento RHC, Fracasso JF, et al (2015). Genetic analysis of five sedentary fish species in middle Laranjinha River (upper Paraná River basin): A case study. Genet. Mol. Res. 14: 18637-18649. http://dx.doi.org/10.4238/2015.December.28.13 Garcez R, Calcagnotto D, Almeida-Toledo LF, et al (2011). Population structure of the migratory fish Prochilodus lineatus (Characiformes) from Rio Grande basin (Brazil), an area fragmented by dams. Aquat. Conserv. 21: 268-275. http://dx.doi.org/10.1002/aqc.1176 Garutti V, et al (1988). Distribuição longitudinal da ictiofauna de um córrego na região noroeste do Estado de São Paulo, Bacia do Rio Paraná. Rev. Bras. Biol. 48: 747-759. Geist J, et al (2011). Integrative freshwater ecology and biodiversity conservation. Ecol. Indic. 11: 1507-1516. http://dx.doi.org/10.1016/j.ecolind.2011.04.002 Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices, version 2.9.3. Available at [www.unil.ch/izea/softwares/fstat.html]. Accessed September 10, 2015. Hughes JM, Schmidt DJ, Finn DS, et al (2009). Genes in streams: using DNA to understand the movement of freshwater fauna and their riverine habitat. Bioscience 59: 573-583. http://dx.doi.org/10.1525/bio.2009.59.7.8 Kimura M, Weiss GH, et al (1964). Stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49: 561-576. Kullander SO (2003). Check list of the freshwater fishes of South and Central America. Family Cichlidae (Cichlids). EDIPUCRS, Porto Alegre, 605-654. Leuzzi SMP, Almeida FS, Orsi ML, Sodré LMK, et al (2004). Analysis by RAPD of the genetic structure of Astyanax altiparanae (Pisces, Characiformes) in reservoirs on the Paranapanema River, Brazil. Genet. Mol. Biol. 27: 355-362. http://dx.doi.org/10.1590/S1415-47572004000300009 Luiz EA, Agostinho AA, Gomes LC, Hahn NS, et al (1998). Ecologia trófica de peixes em dois riachos da bacia do Rio Paraná. Rev. Bras. Biol. 58: 273-285. Miller MP (1997). Tools for population genetic analyses (TFPGA) 1.3: a Windows program for the analysis of allozyme and molecular population genetic data, version 1.3. Computer software distributed by the author. Moysés CB, Almeida-Toledo LFD, et al (2002). Restriction fragment length polymorphisms of mitochondrial DNA among five freshwater fish species of the genus Astyanax (Pisces, Characidae). Genet. Mol. Biol. 25: 401-407. http://dx.doi.org/10.1590/S1415-47572002000400008 Paiva SR, Dergam JA, Machado F, et al (2006). Determining management units in southeastern Brazil: the case of Astyanax bimaculatus (Linnaeus, 1758) (Teleostei: Ostariophysi: Characidae). Hydrobiologia 560: 393-404. http://dx.doi.org/10.1007/s10750-005-9415-1 Pamponet VCC, Carneiro PLS, Affonso PRAM, Miranda VS, et al (2008). A multi-approach analysis of the genetic diversity in populations of Astyanax aff. bimaculatus Linnaeus, 1758 (Teleostei: Characidae) from Northeastern Brazil. Neotrop. Ichthyol. 6: 621-630. http://dx.doi.org/10.1590/S1679-62252008000400010 Piry S, Luikart G, Cornuet JM, et al (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90: 502-503. http://dx.doi.org/10.1093/jhered/90.4.502 Prioli SM, Prioli AJ, Júlio HFJrPavanelliCS, et al (2002). Identification of Astyanax altiparanae (Teleostei, Characidae) in the Iguaçu River, Brazil, based on mitochondrial DNA and RAPD markers. Genet. Mol. Biol. 25: 421-430. http://dx.doi.org/10.1590/S1415-47572002000400011 Pritchard JK, Stephens M, Donnelly P, et al (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. Raymond M, Rousset M, et al (1995). Genepop (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249. Schuelke M, et al (2000). An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18: 233-234. http://dx.doi.org/10.1038/72708 Sofia SH, Silva CRM, Galindo BA, Almeida FS, et al (2006). Population Genetic Structure of Astyanax scabripinnis (Teleostei, Characidae) from an Urban Stream. Hydrobiologia 553: 245-254. http://dx.doi.org/10.1007/s10750-005-1106-4 Sofia SH, Galindo BA, Paula FM, Sodré LMK, et al (2008). Genetic diversity of Hypostomus ancistroides (Teleostei, Loricariidae) from an urban stream. Genet. Mol. Biol. 1: 317-323. http://dx.doi.org/10.1590/S1415-47572008000200027 Suzuki HI, Pelicice FM, Luiz EA, Latini JD, et al. (2002). A planície alagável do rio Paraná: estrutura e processos ambientais. In: Estratégias reprodutivas da assembléia de peixes da planície de inundação do alto rio Paraná (Agostinho AA, Thomaz SM, Nakatani K, eds.). Pesquisas Ecológicas de Longa Duração, UEM, Maringá, 113-116. Vrijenhoek RC, et al (1998). Conservation genetics of freshwater fish. J. Fish Biol. 53: 394-412. http://dx.doi.org/10.1111/j.1095-8649.1998.tb01039.x Wilson GA, Rannala B, et al (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191. Winemiller KO, Agostinho AA and Caramaschi ÉP (2008). Fish ecology in tropical streams. In: Tropical stream ecology (Dudgeon D, ed.). Academic Press, Amsterdam, 107-146. Yeh FC, Yang R, Boyle TJ and Xiyan JM (2000). Pop Gene 32. Microsoft window-based freeware for population genetic analysis, v.1.32. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton. Zaganini RL, Hashimoto DT, Pereira LHG, Oliveira C, et al (2012). Isolation and characterization of microsatellite loci in the Neotropical fish Astyanax altiparanae (Teleostei: Characiformes) and cross-species amplification. J. Genet. 91: e24-e27.