Publications

Found 2 results
Filters: Author is J.H. Amorim  [Clear All Filters]
2012
J. H. Amorim, Vidal, R. O., Lacerda-Junior, G. V., Dias, J. C. T., Brendel, M., Rezende, R. P., and Cascardo, J. C. M., A simple boiling-based DNA extraction for RAPD profiling of landfarm soil to provide representative metagenomic content, vol. 11, pp. 182-189, 2012.
Amorim JH, Macena TN, Lacerda GV Jr, Rezende RP, et al. (2008). An improved extraction protocol for metagenomic DNA from a soil of the Brazilian Atlantic Rainforest. Genet. Mol. Res. 7: 1226-1232. http://dx.doi.org/10.4238/vol7-4gmr509 PMid:19065757 Ashburner M, Ball CA, Blake JA, Botstein D, et al. (2000). Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25: 25-29. http://dx.doi.org/10.1038/75556 PMid:10802651    PMCid:3037419 Daniel R (2004). The soil metagenome - a rich resource for the discovery of novel natural products. Curr. Opin. Biotechnol. 15: 199-204. http://dx.doi.org/10.1016/j.copbio.2004.04.005 PMid:15193327 Ewing B, Hillier L, Wendl MC and Green P (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185. PMid:9521921 Huson DH, Auch AF, Qi J and Schuster SC (2007). MEGAN analysis of metagenomic data. Genome Res. 17: 377-386. http://dx.doi.org/10.1101/gr.5969107 PMid:17255551    PMCid:1800929 Johnson PL and Slatkin M (2006). Inference of population genetic parameters in metagenomics: a clean look at messy data. Genome Res. 16: 1320-1327. http://dx.doi.org/10.1101/gr.5431206 PMid:16954540    PMCid:1581441 Kanehisa M and Goto S (2000). KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28: 27-30. http://dx.doi.org/10.1093/nar/28.1.27 PMid:10592173    PMCid:102409 Maciel BM, Dias JC, Dos Santos AC, Argolo Filho RC, et al. (2007). Microbial surfactant activities from a petrochemical landfarm in a humid tropical region of Brazil. Can. J. Microbiol. 53: 937-943. http://dx.doi.org/10.1139/W07-052 PMid:17898850 McHardy AC and Rigoutsos I (2007). What’s in the mix: phylogenetic classification of metagenome sequence samples. Curr. Opin. Microbiol. 10: 499-503. http://dx.doi.org/10.1016/j.mib.2007.08.004 PMid:17933580 Riesenfeld CS, Schloss PD and Handelsman J (2004). Metagenomics: genomic analysis of microbial communities. Annu. Rev. Genet. 38: 525-552. http://dx.doi.org/10.1146/annurev.genet.38.072902.091216 PMid:15568985 Robe P, Nalin R, Capellano C, Vogel TM, et al. (2003). Extraction of DNA from soil. Eur. J. Soil. Biol. 39: 183-190. http://dx.doi.org/10.1016/S1164-5563(03)00033-5 Roh C, Villatte F, Kim BG and Schmid RD (2006). Comparative study of methods for extraction and purification of enviromental DNA from soil and sludge samples. Appl. Biochem. Biotech. 134: 97-112. http://dx.doi.org/10.1385/ABAB:134:2:97 Rondon MR, August PR, Bettermann AD, Brady SF, et al. (2000). Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66: 2541-2547. http://dx.doi.org/10.1128/AEM.66.6.2541-2547.2000 PMid:10831436    PMCid:110579 Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, New York. Schloss PD and Handelsman J (2003). Biotechnological prospects from metagenomics. Curr. Opin. Biotechnol. 14: 303-310. http://dx.doi.org/10.1016/S0958-1669(03)00067-3 Smit AFA, Hubley R and Green P (2004). RepeatMasker Open-3.0. 1996-2007. Streit WR and Schmitz RA (2004). Metagenomics - the key to the uncultured microbes. Curr. Opin. Microbiol. 7: 492-498. http://dx.doi.org/10.1016/j.mib.2004.08.002 PMid:15451504 Yun J, Kang S, Park S, Yoon H, et al. (2004). Characterization of a novel amylolytic enzyme encoded by a gene from a soil-derived metagenomic library. Appl. Environ. Microbiol. 70: 7229-7235. http://dx.doi.org/10.1128/AEM.70.12.7229-7235.2004 PMid:15574921    PMCid:535135