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“Testing the utility of mitochondrial cytochrome oxidase subunit 1 sequences for phylogenetic estimates of relationships between crane (Grus) species”, vol. 10, pp. 4048-4062, 2011.
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Chaves AV, Clozato CL, Lacerda DR, Sari EH, et al. (2008). Molecular taxonomy of Brazilian tyrant-flycatchers (Passeriformes: Tyrannidae). Mol. Ecol. Resour. 8: 1169-1177.
http://dx.doi.org/10.1111/j.1755-0998.2008.02218.x
PMid:21586004
Dessauer HC, Gee GF and Rogers JS (1992). Allozyme evidence for crane systematics and polymorphisms within populations of Sandhill, Sarus, Siberian, and whooping cranes. Mol. Phylogenet. Evol. 1: 279-288.
http://dx.doi.org/10.1016/1055-7903(92)90003-Y
Fain MG (2001). Phylogeny and evolution of cranes (Aves: Gruidae) inferred from DNA sequences of multiple genes. Ph.D. dissertation.
Fain MG, Krajewski C and Houde P (2007). Phylogeny of "core Gruiformes" (Aves: Grues) and resolution of the Limpkin- Sungrebe problem. Mol. Phylogenet. Evol. 43: 515-529.
http://dx.doi.org/10.1016/j.ympev.2007.02.015
PMid:17419074
Frezal L and Leblois R (2008). Four years of DNA barcoding: current advances and prospects. Infect. Genet. Evol. 8: 727-736.
http://dx.doi.org/10.1016/j.meegid.2008.05.005
PMid:18573351
Funk DJ and Omland KE (2003). Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Systemat. 34: 397-423.
http://dx.doi.org/10.1146/annurev.ecolsys.34.011802.132421
Hackett SJ, Kimball RT, Reddy S, Bowie RC, et al. (2008). A phylogenomic study of birds reveals their evolutionary history. Science 320: 1763-1768.
http://dx.doi.org/10.1126/science.1157704
PMid:18583609
Hajibabaei M, Singer GA, Clare EL and Hebert PD (2007). Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring. BMC Biol. 5: 24.
http://dx.doi.org/10.1186/1741-7007-5-24
PMid:17567898 PMCid:1906742
Hebert PD, Cywinska A, Ball SL and deWaard JR (2003a). Biological identifications through DNA barcodes. Proc. Biol. Sci. 270: 313-321.
http://dx.doi.org/10.1098/rspb.2002.2218
PMid:12614582 PMCid:1691236
Hebert PD, Ratnasingham S and deWaard JR (2003b). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. Biol. Sci. 270 (Suppl 1): S96-S99.
http://dx.doi.org/10.1098/rsbl.2003.0025
PMid:12952648 PMCid:1698023
Hebert PD, Stoeckle MY, Zemlak TS and Francis CM (2004). Identification of Birds through DNA Barcodes. PLoS Biol. 2: e312.
http://dx.doi.org/10.1371/journal.pbio.0020312
PMid:15455034 PMCid:518999
Hebert PD, deWaard JR and Landry JF (2010). DNA barcodes for 1/1000 of the animal kingdom. Biol. Lett. 6: 359-362.
http://dx.doi.org/10.1098/rsbl.2009.0848
PMid:20015856 PMCid:2880045
Houde P, Cooper A, Leslie E, Strand AE, et al (1997). Phylogeny and Evolution of 12S rDNA in Gruiformes. In: Avian Molecular Evolution and Systematics (Mindell DP, ed.). Academic Press, San Diego, 121-158.
http://dx.doi.org/10.1016/B978-012498315-1/50009-1
Kerr KC, Stoeckle MY and Dove CJ (2007). Comprehensive DNA barcode coverage of North American birds. Mol. Ecol. Notes 7: 535-543.
http://dx.doi.org/10.1111/j.1471-8286.2007.01670.x
PMid:18784793 PMCid:2259444
Kerr KC, Birks SM and Kalyakin MV (2009a). Filling the gap - COI barcode resolution in eastern Palearctic birds. Front. Zool. 6: 29.
http://dx.doi.org/10.1186/1742-9994-6-29
PMid:20003213 PMCid:2796652
Kerr KC, Lijtmaer DA, Barreira AS, Hebert PD, et al. (2009b). Probing evolutionary patterns in neotropical birds through DNA barcodes. PLoS One 4: e4379.
http://dx.doi.org/10.1371/journal.pone.0004379
PMid:19194495 PMCid:2632745
Kimura M (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
http://dx.doi.org/10.1007/BF01731581
PMid:7463489
Krajewski C (1989). Phylogenetic relationships among cranes (Gruiformes: Gruidae) based on DNA hybridization. Auk 106: 603-618.
Krajewski C, Fain MG, Buckley L and King DG (1999). Dynamically heterogenous partitions and phylogenetic inference: an evaluation of analytical strategies with cytochrome b and ND6 gene sequences in cranes. Mol. Phylogenet. Evol. 13: 302-313.
http://dx.doi.org/10.1006/mpev.1999.0646
PMid:10603258
Krajewski C, Sipiorski JT and Anderson FE (2010). Complete mitochondrial genomes and the phylogeny cranes (Gruiformes: Gruidae). Auk 127: 440-452.
http://dx.doi.org/10.1525/auk.2009.09045
Kress WJ and Erickson DL (2008). DNA barcodes: genes, genomics, and bioinformatics. Proc. Natl. Acad. Sci. U. S. A. 105: 2761-2762.
http://dx.doi.org/10.1073/pnas.0800476105
PMid:18287050 PMCid:2268532
Livezey BC (1989). Flightlessness in grebes (Aves, Podicipedidae): its independent evolution in three genera. Evolution 43: 29-54.
http://dx.doi.org/10.2307/2409162
Livezey BC (1998). A phylogenetic analysis of the Gruiformes (Aves) based on morphological characters,with an emphasis on the rails (Rallidae). Philos. Trans. R. Soc. Lond. B Biol. Sci. 353: 2077-2151.
http://dx.doi.org/10.1098/rstb.1998.0353
PMCid:1692427
Marshall E (2005). Taxonomy. Will DNA bar codes breathe life into classification? Science 307: 1037.
http://dx.doi.org/10.1126/science.307.5712.1037
PMid:15718446
McKay BD and Zink RM (2010). The causes of mitochondrial DNA gene tree paraphyly in birds. Mol. Phylogenet. Evol. 54: 647-650.
http://dx.doi.org/10.1016/j.ympev.2009.08.024
PMid:19716428
Park SH, Zhang Y, Piao H, Yu DH, et al. (2009). Use of cytochrome c oxidase subunit i (COI) nucleotide sequences for identification of the Korean Luciliinae fly species (Diptera: Calliphoridae) in forensic investigations. J. Korean Med. Sci. 24: 1058-1063.
http://dx.doi.org/10.3346/jkms.2009.24.6.1058
PMid:19949660 PMCid:2775852
Pedersen N, Holyoak DT and Newton AE (2007). Systematics and morphological evolution within the moss family Bryaceae: a comparison between parsimony and Bayesian methods for reconstruction of ancestral character states. Mol. Phylogenet. Evol. 43: 891-907.
http://dx.doi.org/10.1016/j.ympev.2006.10.018
PMid:17161629
Petersen JL, Bischof R, Krapu GL and Szalanski AL (2003). Genetic variation in the midcontinental population of sandhill cranes, Grus canadensis. Biochem. Genet. 41: 1-12.
http://dx.doi.org/10.1023/A:1020985427461
PMid:12645869
Pleijel F, Jondelius U, Norlinder E, Nygren A, et al. (2008). Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic studies. Mol. Phylogenet. Evol. 48: 369-371.
http://dx.doi.org/10.1016/j.ympev.2008.03.024
PMid:18424089
Ronquist F and Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
http://dx.doi.org/10.1093/bioinformatics/btg180
PMid:12912839
Sambrook J and Russell DW (2001). Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
Sibley CG and Monroe BL (1990). Infraorder Gruides. In: Distribution and Taxonomy of Birds of the World Yale University Press, New Haven, London, 217-219.
Tamura K and Nei M (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
PMid:8336541
Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
http://dx.doi.org/10.1093/molbev/msm092
PMid:17488738
Wilgenbusch JC and Swofford D (2003). Inferring Evolutionary Trees with PAUP*. Curr. Protoc. Bioinformatics Chapter 6, Unit 6 4.
Wood DS (1979). Phenetic relationships within the family Gruidae. Wilson Bull. 91: 384-399.
Xia X and Xie Z (2001). DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92: 371-373.
http://dx.doi.org/10.1093/jhered/92.4.371
PMid:11535656
Yang R, Wu X, Yan P and Li X (2010a). Using DNA barcodes to identify a bird involved in a birdstrike at a Chinese airport. Mol. Biol. Rep. 37: 3517-3523.
http://dx.doi.org/10.1007/s11033-009-9945-0
PMid:20033492
Yang R, Wu X, Yan P, Su X, et al. (2010b). Complete mitochondrial genome of Otis tarda (Gruiformes: Otididae) and phylogeny of Gruiformes inferred from mitochondrial DNA sequences. Mol. Biol. Rep. 37: 3057-3066.
http://dx.doi.org/10.1007/s11033-009-9878-7
PMid:19823949
Yoo HS, Eah JY, Kim JS, Kim YJ, et al. (2006). DNA barcoding Korean birds. Mol. Cells 22: 323-327.
PMid:17202861