Publications
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“Association between C677T and A1298C polymorphisms of the MTHFR gene and risk of male infertility: a meta-analysis”, vol. 15, p. -, 2016.
, “Association between C677T and A1298C polymorphisms of the MTHFR gene and risk of male infertility: a meta-analysis”, vol. 15, p. -, 2016.
, “Association between C677T and A1298C polymorphisms of the MTHFR gene and risk of male infertility: a meta-analysis”, vol. 15, p. -, 2016.
, “Characterization and comparison of transgenic Artemisia annua GYR and wild-type NON-GYR plants in an environmental release trial”, vol. 15, p. -, 2016.
, “Characterization and comparison of transgenic Artemisia annua GYR and wild-type NON-GYR plants in an environmental release trial”, vol. 15, p. -, 2016.
, “Development and characterization of microsatellite loci in Brasenia schreberi (Cabombaceae) based on the next-generation sequencing”, vol. 15, p. -, 2016.
, “Development and characterization of microsatellite loci in Brasenia schreberi (Cabombaceae) based on the next-generation sequencing”, vol. 15, p. -, 2016.
, “Development and characterization of microsatellite loci in Brasenia schreberi (Cabombaceae) based on the next-generation sequencing”, vol. 15, p. -, 2016.
, “Development and characterization of microsatellite markers for Ulmus chenmoui (Ulmaceae), an endangered tree endemic to eastern China”, vol. 15, p. -, 2016.
, “Development and characterization of microsatellite markers for Ulmus chenmoui (Ulmaceae), an endangered tree endemic to eastern China”, vol. 15, p. -, 2016.
, “In vitro expansion and differentiation of rat pancreatic duct-derived stem cells into insulin secreting cells using a dynamicthree-dimensional cell culture system”, vol. 15, p. -, 2016.
, “In vitro expansion and differentiation of rat pancreatic duct-derived stem cells into insulin secreting cells using a dynamicthree-dimensional cell culture system”, vol. 15, p. -, 2016.
, “Isolation and characterization of novel polymorphic microsatellite loci in Perinereis aibuhitensis”, vol. 15, p. -, 2016.
, “Isolation and characterization of novel polymorphic microsatellite loci in Perinereis aibuhitensis”, vol. 15, p. -, 2016.
, “MTHFR C677T and A1298C polymorphisms and risk of lung cancer: a comprehensive evaluation”, vol. 15, p. -, 2016.
, , , “Association between GSTM1 polymorphisms and lung cancer: an updated meta-analysis”, vol. 14, pp. 1385-1392, 2015.
, “Association of adiponectin gene polymorphisms with hypertensive disorder complicating pregnancy and disorders of lipid metabolism”, vol. 14, pp. 15213-15223, 2015.
, “Development of expressed sequence tag-simple sequence repeat markers for Chrysanthemum morifolium and closely related species”, vol. 14, pp. 7578-7586, 2015.
, “Effect of progranulin (PGRN) on the proliferation and senescence of cervical cancer cells”, vol. 14, pp. 14331-14338, 2015.
, “Effect of TIMP1 transfection on PTEN expression in human kidney proximal tubular cells”, vol. 14, pp. 17373-17383, 2015.
, “Highly efficient one-step PCR-based mutagenesis technique for large plasmids using high-fidelity DNA polymerase”, vol. 14, pp. 3466-3473, 2015.
, “Linking lignocellulosic dietary patterns with gut microbial Enterotypes of Tsaitermes ampliceps and comparison with Mironasutitermes shangchengensis”, vol. 14, pp. 13954-13967, 2015.
, “Natural variation of rice blast resistance gene Pi-d2”, vol. 14, pp. 1235-1249, 2015.
, “Reduced miRNA-218 expression in pancreatic cancer patients as a predictor of poor prognosis”, vol. 14, pp. 16372-16378, 2015.
, “Role of interleukin-6 gene polymorphisms in the risk of coronary artery disease”, vol. 14, pp. 3177-3183, 2015.
, “Cellulolytic activity and structure of symbiotic bacteria in locust guts”, vol. 13, pp. 7926-7936, 2014.
, “Diagnosis of lymph node micrometastasis at the pN0 stage of lung adenocarcinoma using a combination of markers”, vol. 13, pp. 5594-5600, 2014.
, “Fas/FasL in the immune pathogenesis of severe aplastic anemia”, vol. 13, pp. 4083-4088, 2014.
, , , “Characterization of SNPs in strawberry cultivars in China”, vol. 12, pp. 639-645, 2013.
, Bhattramakki D and Rafalski A (2001). Discovery and Application of Single Nucleotide Polymorphism Markers in Plants. In: Plant Genotyping: The DNA Fingerprinting of Plants (Henry RJ, ed.). CABI Publishing, Oxon, 179-191.
http://dx.doi.org/10.1079/9780851995151.0179
Bhattramakki D, Dolan M, Hanafey M, Wineland R, et al. (2002). Insertion-deletion polymorphisms in 3' regions of maize genes occur frequently and can be used as highly informative genetic markers. Plant Mol. Biol. 48: 539-547.
http://dx.doi.org/10.1023/A:1014841612043
PMid:12004893
Brookes AJ (1999). The essence of SNPs. Gene 234: 177-186.
http://dx.doi.org/10.1016/S0378-1119(99)00219-X
Cargill M, Altshuler D, Ireland J, Sklar P, et al. (1999). Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat. Genet. 22: 231-238.
http://dx.doi.org/10.1038/10290
PMid:10391209
Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, et al. (1999). Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nat. Genet. 23: 203-207.
http://dx.doi.org/10.1038/13833
PMid:10508518
Gupta PK, Roy JK and Prasad M (2001). Single nucleotide polymorphism: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Curr. Sci. 80: 524-535.
Hoskins RA, Phan AC, Naeemuddin M, Mapa FA, et al. (2001). Single nucleotide polymorphism markers for genetic mapping in Drosophila melanogaster. Genome Res. 11: 1100-1113.
http://dx.doi.org/10.1101/gr.GR-1780R
PMid:11381036 PMCid:311062
Jander G, Norris SR, Rounsley SD, Bush DF, et al. (2002). Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129: 440-450.
http://dx.doi.org/10.1104/pp.003533
PMid:12068090 PMCid:1540230
Khlestkina EK and Salina EA (2006). SNP markers: methods of analysis, ways of development, and comparison on an example of common wheat. Genetika 42: 725-736.
PMid:16871776
Marth GT, Korf I, Yandell MD, Yeh RT, et al. (1999). A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23: 452-456.
http://dx.doi.org/10.1038/70570
PMid:10581034
Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, et al. (1999). Mining SNPs from EST databases. Genome Res. 9: 167-174.
PMid:10022981 PMCid:310719
Primmer CR, Borge T, Lindell J and Saetre GP (2002). Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Mol. Ecol. 11: 603-612.
http://dx.doi.org/10.1046/j.0962-1083.2001.01452.x
PMid:11918793
Rafalski A (2002). Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 5: 94-100.
http://dx.doi.org/10.1016/S1369-5266(02)00240-6
Rozen S and Skaletsky H (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
PMid:10547847
Saghai-Maroof MA, Soliman KM, Jorgensen RA and Allard RW (1984). Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U. S. A. 81: 8014-8018.
http://dx.doi.org/10.1073/pnas.81.24.8014
PMid:6096873 PMCid:392284
Salmaso M, Faes G, Segala C, Stefanini M, et al. (2004). Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphisms. Mol. Breed. 14: 385-395.
http://dx.doi.org/10.1007/s11032-004-0261-z
Shamay A, Fang J, Pollak N, Yonash N, et al. (2006). Discovery of c-SNPs in Anemone coronaria and assessment of genetic variation. Genet. Resour. Crop Evol. 53: 821-829.
http://dx.doi.org/10.1007/s10722-004-6377-5
Stoneking M (2001). Single nucleotide polymorphisms. From the evolutionary past. Nature 409: 821-822.
http://dx.doi.org/10.1038/35057279
PMid:11236996
Twito T, Weigend S, Blum S, Granevitze Z, et al. (2007). Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions. Cytogenet. Genome Res. 117: 319-326.
http://dx.doi.org/10.1159/000103194
PMid:17675874
Vignal A, Milan D, SanCristobal M and Eggen A (2002). A review on SNP and other types of molecular markers and their use in animal genetics. Genet. Sel. Evol. 34: 275-305.
http://dx.doi.org/10.1186/1297-9686-34-3-275
PMid:12081799 PMCid:2705447
Wang DG, Fan JB, Siao CJ, Berno A, et al. (1998). Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280: 1077-1082.
http://dx.doi.org/10.1126/science.280.5366.1077
PMid:9582121
Wolters P, Powell W, Lagudah E, Snape J, et al (2000). Nucleotide Diversity at Homologous Loci in Wheat. In: Plant and Animal Genome VIII Conference, San Diego, 9-12.
Xiong M and Jin L (1999). Comparison of the power and accuracy of biallelic and microsatellite markers in population-based gene-mapping methods. Am. J. Hum. Genet. 64: 629-640.
http://dx.doi.org/10.1086/302231
PMid:9973302 PMCid:1377774
Yang W, Bai X, Kabelka E, Eaton C, et al. (2004). Discovery of single nucleotide polymorphisms in Lycopersicon esculentum by computer aided analysis of expressed sequence tags. Mol. Breed. 14: 21-34.
http://dx.doi.org/10.1023/B:MOLB.0000037992.03731.a5
“Novel association analysis between HLA-DQB1 polymorphisms and rectal cancer based on a cross-validation design”, vol. 12, pp. 5958-5963, 2013.
, “Are bone mineral density loci associated with hip osteoporotic fractures? A validation study on previously reported genome-wide association loci in a Chinese population”, vol. 11, pp. 202-210, 2012.
, Cooper C, Campion G and Melton LJ, III (1992). Hip fractures in the elderly: a world-wide projection. Osteoporos. Int. 2: 285-289.
http://dx.doi.org/10.1007/BF01623184
PMid:1421796
Cummings SR and Melton LJ (2002). Epidemiology and outcomes of osteoporotic fractures. Lancet 359: 1761-1767.
http://dx.doi.org/10.1016/S0140-6736(02)08657-9
Deng HW, Mahaney MC, Williams JT, Li J, et al. (2002). Relevance of the genes for bone mass variation to susceptibility to osteoporotic fractures and its implications to gene search for complex human diseases. Genet. Epidemiol. 22: 12-25.
http://dx.doi.org/10.1002/gepi.1040
PMid:11754470
Gullberg B, Johnell O and Kanis JA (1997). World-wide projections for hip fracture. Osteoporos. Int. 7: 407-413.
http://dx.doi.org/10.1007/PL00004148
PMid:9425497
Guo Y, Tan LJ, Lei SF, Yang TL, et al. (2010a). Genome-wide association study identifies ALDH7A1 as a novel susceptibility gene for osteoporosis. PLoS Genet. 6: e1000806.
http://dx.doi.org/10.1371/journal.pgen.1000806
PMid:20072603 PMCid:2794362
Guo Y, Zhang LS, Yang TL, Tian Q, et al. (2010b). IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study. J. Bone Miner. Res. 25: 1042-1048.
PMid:19874204 PMCid:3153368
Hazenberg JG, Taylor D and Lee TC (2007). The role of osteocytes and bone microstructure in preventing osteoporotic fractures. Osteoporos. Int. 18: 1-8.
http://dx.doi.org/10.1007/s00198-006-0222-y
PMid:16972016
Johnell O, Kanis JA, Oden A, Johansson H, et al. (2005). Predictive value of BMD for hip and other fractures. J. Bone Miner. Res. 20: 1185-1194.
http://dx.doi.org/10.1359/JBMR.050304
PMid:15940371
Kanis JA, Oden A, Johnell O, Johansson H, et al. (2007). The use of clinical risk factors enhances the performance of BMD in the prediction of hip and osteoporotic fractures in men and women. Osteoporos. Int. 18: 1033-1046.
http://dx.doi.org/10.1007/s00198-007-0343-y
PMid:17323110
Lau EM, Cooper C, Fung H, Lam D, et al. (1999). Hip fracture in Hong Kong over the last decade - a comparison with the UK. J. Public. Health Med. 21: 249-250.
http://dx.doi.org/10.1093/pubmed/21.3.249
Lau EM, Lee JK, Suriwongpaisal P, Saw SM, et al. (2001). The incidence of hip fracture in four Asian countries: the Asian Osteoporosis Study (AOS). Osteoporos. Int. 12: 239-243.
http://dx.doi.org/10.1007/s001980170135
PMid:11315243
Marchini J, Howie B, Myers S, McVean G, et al. (2007). A new multipoint method for genome-wide association studies by imputation of genotypes. Nat. Genet. 39: 906-913.
http://dx.doi.org/10.1038/ng2088
PMid:17572673
Marshall D, Johnell O and Wedel H (1996). Meta-analysis of how well measures of bone mineral density predict occurrence of osteoporotic fractures. BMJ 312: 1254-1259.
http://dx.doi.org/10.1136/bmj.312.7041.1254
PMid:8634613 PMCid:2351094
Melton LJ III (2000). Who has osteoporosis? A conflict between clinical and public health perspectives. J. Bone Miner. Res. 15: 2309-2314.
http://dx.doi.org/10.1359/jbmr.2000.15.12.2309
PMid:11127196
Melton LJ III (2003). Adverse outcomes of osteoporotic fractures in the general population. J. Bone Miner. Res. 18: 1139- 1141.
http://dx.doi.org/10.1359/jbmr.2003.18.6.1139
PMid:12817771
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, et al. (2006). Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38: 904-909.
http://dx.doi.org/10.1038/ng1847
PMid:16862161
Richards JB, Rivadeneira F, Inouye M, Pastinen TM, et al. (2008). Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study. Lancet 371: 1505-1512.
http://dx.doi.org/10.1016/S0140-6736(08)60599-1
Rivadeneira F, Styrkarsdottir U, Estrada K, Halldorsson BV, et al. (2009). Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. Nat. Genet. 41: 1199-1206.
http://dx.doi.org/10.1038/ng.446
PMid:19801982 PMCid:2783489
Siris ES (2006). Patients with hip fracture: what can be improved? Bone 38: S8-12.
http://dx.doi.org/10.1016/j.bone.2005.11.014
PMid:16406848
Styrkarsdottir U, Halldorsson BV, Gretarsdottir S, Gudbjartsson DF, et al. (2008). Multiple genetic loci for bone mineral density and fractures. N. Engl. J. Med. 358: 2355-2365.
http://dx.doi.org/10.1056/NEJMoa0801197
PMid:18445777
Styrkarsdottir U, Halldorsson BV, Gretarsdottir S, Gudbjartsson DF, et al. (2009). New sequence variants associated with bone mineral density. Nat. Genet. 41: 15-17.
http://dx.doi.org/10.1038/ng.284
PMid:19079262
Styrkarsdottir U, Halldorsson BV, Gudbjartsson DF, Tang NL, et al. (2010). European bone mineral density loci are also associated with BMD in East-Asian populations. PLoS One 5: e13217.
http://dx.doi.org/10.1371/journal.pone.0013217
PMid:20949110 PMCid:2951352
“Morphological variation of mutant sunflowers (Helianthus annuus) induced by space flight and their genetic background detection by SSR primers”, vol. 11, pp. 3379-3388, 2012.
, Ahloowalia BS, Maluszynski M and Nichterlein K (2004). Global impact of mutation-derived varieties. Euphytica 135: 187-204.
http://dx.doi.org/10.1023/B:EUPH.0000014914.85465.4f
Arias DM and Rieseberg LM (1995). Genetic relationships among domesticated and wild sunflowers (Helianthus annuus, Asteraceae). Econ. Bot. 49: 239-248.
http://dx.doi.org/10.1007/BF02862340
Bamberg J (2006). Crazy sepal: A new floral sepallata-like mutant in the wild potato Solanum microdontum Bitter. Am. J. Potato Res. 83: 433-435.
http://dx.doi.org/10.1007/BF02872019
Chen WY, Chen ZY and Yang J (2009). Floral morphological characters and pollination characteristics of sunflower induced by space flight. J. Mianyang Norm. Univ. 28: 56-60.
Chen XD, Lan J and Wang XG (2007). Primary effects on Isatis indigotica after spaceflight. Zhong Yao Cai 30: 381-383.
PMid:17674782
Cyranoski D (2001). Satellite will probe mutating seeds in space. Nature 410: 857.
http://dx.doi.org/10.1038/35073784
PMid:11309578
Frez JB and Simpsom J (1964). The pollination requirements of sunflowers. Emp. J. Exp. Agric. 32: 340-342.
Gentzbittel L, Zhang YX, Vear F, Griveau B, et al. (1994). RFLP studies of genetic relationships among inbred lines of the cultivated sunflower, Helianthus annuus L.: evidence for distinct restorer and maintainer germplasm pools. Theor. Appl. Genet. 89: 419-425.
http://dx.doi.org/10.1007/BF00225376
Heesacker A, Kishore VK, Gao W, Tang S, et al. (2008). SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility. Theor. Appl. Genet. 117: 1021-1029.
http://dx.doi.org/10.1007/s00122-008-0841-0
PMid:18633591
Hongtrakul V, Huestis GM and Knapp SJ (1997). Amplified fragment length polymorphisms as a tool for DNA fingerprinting sunflower germplasm: genetic diversity among oilseed inbredlines. Theor. Appl. Genet. 95: 400-407.
http://dx.doi.org/10.1007/s001220050576
Knapp SJ, Berry ST and Rieseberg LH (2001). Genetic Mapping Insunflower. In: DNA Markers in Plants (Philips RL and Vasil IK, eds.). Kluwer Academic Publishers, Dordrecht, 379-403.
Kondyurin A (2001). Large-size space laboratory for biological orbit experiments. Adv. Space Res. 28: 665-671.
http://dx.doi.org/10.1016/S0273-1177(01)00376-3
Li JT, Yang J, Chen DC, Zhang XL, et al. (2007). An optimized mini-preparation method to obtain high-quality genomic DNA from mature leaves of sunflower. Genet. Mol. Res. 6: 1064-1071.
PMid:18273799
Li SZ, Cao MJ, Rong TZ, Pan GT, et al. (2007). Cytological observation on pollen abortion of genetic male sterile mutant induced by space flight in maize. Fen Zi Xi Bao Sheng Wu Xue Bao 40: 359-364.
PMid:18254342
Lu WH, Wang XZ, Zheng Q, Guan SH, et al. (2008). Diversity and stability study on rice mutants induced in space environment. Genomics Proteomics Bioinformatics 6: 51-60.
http://dx.doi.org/10.1016/S1672-0229(08)60020-0
Nehnevajova E, Herzig R, Federer G, Erismann KH, et al. (2007). Chemical mutagenesis - a promising technique to increase metal concentration and extraction in sunflowers. Int. J. Phytoremediation 9: 149-165.
http://dx.doi.org/10.1080/15226510701232880
PMid:18246722
Pelaz S, Ditta GS, Baumann E, Wisman E, et al. (2000). B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 405: 200-203.
http://dx.doi.org/10.1038/35012103
PMid:10821278
Pham-Delegue MH, Etievant P and Guichard E (1990). Chemicals involved in honeybee-sunflower relationship. J. Chem. Ecol. 16: 3053-3065.
http://dx.doi.org/10.1007/BF00979612
Ruyters G and Friedrich U (2006). Gravitational biology within the German Space Program: goals, achievements, and perspectives. Protoplasma 229: 95-100.
http://dx.doi.org/10.1007/s00709-006-0212-0
PMid:17180489
Skorić D, Jocic S, Sakac Z and Lecic N (2008). Genetic possibilities for altering sunflower oil quality to obtain novel oils. Can. J. Physiol. Pharmacol. 86: 215-221.
PMid:18418432
Tang S, Yu JK, Slabaugh B, Shintani K, et al. (2002). Simple sequence repeat map of the sunflower genome. Theor. Appl. Genet. 105: 1124-1136.
http://dx.doi.org/10.1007/s00122-002-0989-y
PMid:12582890
Tang S, Kishore VK and Knapp SJ (2003). PCR-multiplexes for a genome-wide framework of simple sequence repeat marker loci in cultivated sunflower. Theor. Appl. Genet. 107: 6-19.
PMid:12835928
Visscher AM, Paul AL, Kirst M, Alling AK, et al. (2009). Effects of a spaceflight environment on heritable changes in wheat gene expression. Astrobiology 9: 359-367.
http://dx.doi.org/10.1089/ast.2008.0311
PMid:19413505
Wei LJ, Xu JL and Wang JM (2006). A comparative study on mutagenic effects of space flight and irradiation of y-rays on rice. Agric. Sci. China 5: 812-819.
http://dx.doi.org/10.1016/S1671-2927(06)60129-6
“Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon”, vol. 11, pp. 4695-4706, 2012.
, Bulmer M (1988). Are codon usage patterns in unicellular organisms determined by selection-mutation balance? J. Mol. Biol. 1: 15-26.
Bulmer M (1991). The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
PMid:1752426 PMCid:1204756
Carels N and Bernardi G (2000). Two classes of genes in plants. Genetics 154: 1819-1825.
PMid:10747072 PMCid:1461008
Chiapello H, Lisacek F, Caboche M and Henaut A (1998). Codon usage and gene function are related in sequences of Arabidopsis thaliana. Gene 209: GC1-GC38.
http://dx.doi.org/10.1016/S0378-1119(97)00671-9
De Amicis F and Marchetti S (2000). Intercodon dinucleotides affect codon choice in plant genes. Nucleic Acids Res. 28: 3339-3345.
http://dx.doi.org/10.1093/nar/28.17.3339
PMid:10954603 PMCid:110687
Doust A (2007). Architectural evolution and its implications for domestication in grasses. Ann. Bot. 100: 941-950.
http://dx.doi.org/10.1093/aob/mcm040
PMid:17478546 PMCid:2759198
Draper J, Mur LA, Jenkins G, Ghosh-Biswas GC, et al. (2001). Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol. 127: 1539-1555.
http://dx.doi.org/10.1104/pp.010196
PMid:11743099 PMCid:133562
Duret L and Mouchiroud D (1999). Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 96: 4482-4487.
http://dx.doi.org/10.1073/pnas.96.8.4482
PMid:10200288 PMCid:16358
Eyre-Walker AC (1991). An analysis of codon usage in mammals: selection or mutation bias? J. Mol. Evol. 33: 442-449.
http://dx.doi.org/10.1007/BF02103136
PMid:1960741
Gupta SK, Bhattacharyya TK and Ghosh TC (2004). Synonymous codon usage in Lactococcus lactis: mutational bias versus translational selection. J. Biomol. Struct. Dyn. 21: 527-536.
http://dx.doi.org/10.1080/07391102.2004.10506946
PMid:14692797
Hershberg R and Petrov DA (2008). Selection on codon bias. Annu. Rev. Genet. 42: 287-299.
http://dx.doi.org/10.1146/annurev.genet.42.110807.091442
PMid:18983258
International Brachypodium Initiative (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
http://dx.doi.org/10.1038/nature08747
PMid:20148030
Jiang Y, Deng F, Wang H and Hu Z (2008). An extensive analysis on the global codon usage pattern of baculoviruses. Arch. Virol. 153: 2273-2282.
http://dx.doi.org/10.1007/s00705-008-0260-1
PMid:19030954
Kawabe A and Miyashita NT (2003). Patterns of codon usage bias in three dicot and four monocot plant species. Genes Genet. Syst. 78: 343-352.
http://dx.doi.org/10.1266/ggs.78.343
PMid:14676425
Liu H, He R, Zhang H, Huang Y, et al. (2010). Analysis of synonymous codon usage in Zea mays. Mol. Biol. Rep. 37: 677-684.
http://dx.doi.org/10.1007/s11033-009-9521-7
PMid:19330534
Liu Q (2006). Analysis of codon usage pattern in the radioresistant bacterium Deinococcus radiodurans. Biosystems 85: 99-106.
http://dx.doi.org/10.1016/j.biosystems.2005.12.003
PMid:16431014
Liu Q and Xue Q (2005). Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species. J. Genet. 84: 55-62.
http://dx.doi.org/10.1007/BF02715890
PMid:15876584
Liu Q, Feng Y, Zhao X, Dong H, et al. (2004). Synonymous codon usage bias in Oryza sativa. Plant Sci. 167: 101-105.
http://dx.doi.org/10.1016/j.plantsci.2004.03.003
Liu Q, Dou S, Ji Z and Xue Q (2005). Synonymous codon usage and gene function are strongly related in Oryza sativa. Biosystems 80: 123-131.
http://dx.doi.org/10.1016/j.biosystems.2004.10.008
PMid:15823411
Mitreva M, Wendl MC, Martin J, Wylie T, et al. (2006). Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. Genome Biol. 7: R75.
http://dx.doi.org/10.1186/gb-2006-7-8-r75
PMCid:1779591
Morton BR and Wright SI (2007). Selective constraints on codon usage of nuclear genes from Arabidopsis thaliana. Mol. Biol. Evol. 24: 122-129.
http://dx.doi.org/10.1093/molbev/msl139
PMid:17021276
Mukhopadhyay P, Basak S and Ghosh TC (2007a). Synonymous codon usage in different protein secondary structural classes of human genes: implication for increased non-randomness of GC3 rich genes towards protein stability. J. Biosci. 32: 947-963.
http://dx.doi.org/10.1007/s12038-007-0095-z
PMid:17914237
Mukhopadhyay P, Basak S and Ghosh TC (2007b). Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes. Gene 400: 71-81.
http://dx.doi.org/10.1016/j.gene.2007.05.027
PMid:17629420
Murray EE, Lotzer J and Eberle M (1989). Codon usage in plant genes. Nucleic Acids Res. 17: 477-498.
http://dx.doi.org/10.1093/nar/17.2.477
PMid:2644621 PMCid:331598
Naya H, Romero H, Carels N, Zavala A, et al. (2001). Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii. FEBS Lett. 501: 127-130.
http://dx.doi.org/10.1016/S0014-5793(01)02644-8
Peraldi A, Beccari G, Steed A and Nicholson P (2011). Brachypodium distachyon: a new pathosystem to study Fusarium head blight and other Fusarium diseases of wheat. BMC Plant Biol. 11: 100.
http://dx.doi.org/10.1186/1471-2229-11-100
PMid:21639892 PMCid:3123626
Roychoudhury S and Mukherjee D (2010). A detailed comparative analysis on the overall codon usage pattern in herpesviruses. Virus Res. 148: 31-43.
http://dx.doi.org/10.1016/j.virusres.2009.11.018
PMid:19969032
Sharp PM and Li WH (1987). The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15: 1281-1295.
http://dx.doi.org/10.1093/nar/15.3.1281
PMid:3547335 PMCid:340524
Sharp PM, Stenico M, Peden JF and Lloyd AT (1993). Codon usage: mutational bias, translational selection, or both? Biochem. Soc. Trans. 21: 835-841.
PMid:8132077
Shields DC and Sharp PM (1987). Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res. 15: 8023-8040.
http://dx.doi.org/10.1093/nar/15.19.8023
PMid:3118331 PMCid:306324
Shields DC, Sharp PM, Higgins DG and Wright F (1988). "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol. Biol. Evol. 5: 704-716.
PMid:3146682
Stenico M, Lloyd AT and Sharp PM (1994). Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases. Nucleic Acids Res. 22: 2437-2446.
http://dx.doi.org/10.1093/nar/22.13.2437
PMid:8041603 PMCid:308193
Sueoka N (1988). Directional mutation pressure and neutral molecular evolution. Proc. Natl. Acad. Sci. U. S. A. 85: 2653-2657.
http://dx.doi.org/10.1073/pnas.85.8.2653
PMid:3357886 PMCid:280056
Sueoka N and Kawanishi Y (2000). DNA G+C content of the third codon position and codon usage biases of human genes. Gene 261: 53-62.
http://dx.doi.org/10.1016/S0378-1119(00)00480-7
Wang HC and Hickey DA (2007). Rapid divergence of codon usage patterns within the rice genome. BMC Evol. Biol. 7: S6.
http://dx.doi.org/10.1186/1471-2148-7-S1-S6
PMid:17288579 PMCid:1796615
Wright F (1990). The 'effective number of codons' used in a gene. Gene 87: 23-29.
http://dx.doi.org/10.1016/0378-1119(90)90491-9
Zhang WJ, Zhou J, Li ZF, Wang L, et al. (2007). Comparative analysis of codon usage patterns among mitochondrion, chloroplast and nuclear genes in Triticum aestivum L. J. Integr. Plant Biol. 49: 246-254.
http://dx.doi.org/10.1111/j.1744-7909.2007.00404.x
Zhao S, Zhang Q, Chen Z, Zhao Y, et al. (2007). The factors shaping synonymous codon usage in the genome of Burkholderia mallei. J. Genet. Genomics 34: 362-372.
http://dx.doi.org/10.1016/S1673-8527(07)60039-3
“Association of CYP2C19*3 gene polymorphism with breast cancer in Chinese women”, vol. 10, pp. 3514-3519, 2011.
,
Dixit V, Hariparsad N, Li F, Desai P, et al. (2007). Cytochrome P450 enzymes and transporters induced by anti-human immunodeficiency virus protease inhibitors in human hepatocytes: implications for predicting clinical drug interactions. Drug Metab. Dispos. 35: 1853-1859.
http://dx.doi.org/10.1124/dmd.107.016089
PMid:17639026
Economopoulos KP and Sergentanis TN (2010). Does race modify the association between CYP1B1 Val432Leu polymorphism and breast cancer risk? A critical appraisal of a recent meta-analysis. Breast Cancer Res. Treat. 124: 293-294.
http://dx.doi.org/10.1007/s10549-010-1097-3
PMid:20686834
Ekhart C, Doodeman VD, Rodenhuis S, Smits PH, et al. (2008). Influence of polymorphisms of drug metabolizing enzymes (CYP2B6, CYP2C9, CYP2C19, CYP3A4, CYP3A5, GSTA1, GSTP1, ALDH1A1 and ALDH3A1) on the pharmacokinetics of cyclophosphamide and 4-hydroxycyclophosphamide. Pharmacogenet. Genomics 18: 515-523.
http://dx.doi.org/10.1097/FPC.0b013e3282fc9766
PMid:18496131
Ercan B, Ayaz L, Cicek D and Tamer L (2008). Role of CYP2C9 and CYP2C19 polymorphisms in patients with atherosclerosis. Cell Biochem. Funct. 26: 309-313.
http://dx.doi.org/10.1002/cbf.1437
PMid:17868191
Fava C, Montagnana M, Almgren P, Rosberg L, et al. (2008). The V433M variant of the CYP4F2 is associated with ischemic stroke in male Swedes beyond its effect on blood pressure. Hypertension 52: 373-380.
http://dx.doi.org/10.1161/HYPERTENSIONAHA.108.114199
PMid:18574070
Fichtlscherer S, Dimmeler S, Breuer S, Busse R, et al. (2004). Inhibition of cytochrome P450 2C9 improves endothelium-dependent, nitric oxide-mediated vasodilatation in patients with coronary artery disease. Circulation 109: 178-183.
http://dx.doi.org/10.1161/01.CIR.0000105763.51286.7F
PMid:14662709
Gauthier KM, Falck JR, Reddy LM and Campbell WB (2004). 14,15-EET analogs: characterization of structural requirements for agonist and antagonist activity in bovine coronary arteries. Pharmacol. Res. 49: 515-524.
http://dx.doi.org/10.1016/j.phrs.2003.09.014
PMid:15026029
Goetz M and Suman V (2010). Genetic polymorphisms of CYP2D6*10 and CYP2C19*2, *3 are not associated with prognosis, endometrial thickness, or bone mineral density in Japanese breast cancer patients treated with adjuvant tamoxifen. Cancer 116: 1007.
http://dx.doi.org/10.1002/cncr.24827
PMid:20041480
González-Tejera G, Gaedigk A and Corey S (2010). Genetic variants of the drug-metabolizing enzyme CYP2D6 in Puerto Rican psychiatry patients: a preliminary report and potential implications for breast cancer patients. P. R. Health Sci. J. 29: 299-304.
PMid:20799519
Imig JD (2000). Epoxygenase metabolites. Epithelial and vascular actions. Mol. Biotechnol. 16: 233-251.
http://dx.doi.org/10.1385/MB:16:3:233
Jernström H, Bageman E, Rose C, Jonsson PE, et al. (2009). CYP2C8 and CYP2C9 polymorphisms in relation to tumour characteristics and early breast cancer related events among 652 breast cancer patients. Br. J. Cancer 101: 1817-1823.
http://dx.doi.org/10.1038/sj.bjc.6605428
PMid:19935798 PMCid:2788256
Jiang JG, Chen CL, Card JW, Yang S, et al. (2005). Cytochrome P450 2J2 promotes the neoplastic phenotype of carcinoma cells and is up-regulated in human tumors. Cancer Res. 65: 4707.
http://dx.doi.org/10.1158/0008-5472.CAN-04-4173
PMid:15930289
Jiang JG, Ning YG, Chen C, Ma D, et al. (2007). Cytochrome p450 epoxygenase promotes human cancer metastasis. Cancer Res. 67: 6665-6674.
http://dx.doi.org/10.1158/0008-5472.CAN-06-3643
PMid:17638876
Jiang JG, Fu XN, Chen CL and Wang DW (2009). Expression of cytochrome P450 arachidonic acid epoxygenase 2J2 in human tumor tissues and cell lines. Ai Zheng. 28: 93-96.
PMid:19550113
Justenhoven C, Hamann U, Pierl CB, Baisch C, et al. (2009). CYP2C19*17 is associated with decreased breast cancer risk. Breast Cancer Res. Treat. 115: 391-396.
http://dx.doi.org/10.1007/s10549-008-0076-4
PMid:18521743
Knüpfer H, Schmidt R, Stanitz D, Brauckhoff M, et al. (2004). CYP2C and IL-6 expression in breast cancer. Breast 13: 28-34.
http://dx.doi.org/10.1016/j.breast.2003.07.002
PMid:14759713
Lundell K and Wikvall K (2008). Species-specific and age-dependent bile acid composition: aspects on CYP8B and CYP4A subfamilies in bile acid biosynthesis. Curr. Drug Metab. 9: 323-331.
http://dx.doi.org/10.2174/138920008784220574
PMid:18473750
Node K, Ruan XL, Dai J, Yang SX, et al. (2001). Activation of Galpha s mediates induction of tissue-type plasminogen activator gene transcription by epoxyeicosatrienoic acids. J. Biol. Chem. 276: 15983-15989.
http://dx.doi.org/10.1074/jbc.M100439200
PMid:11279071
Ozbek YK, Ozturk T, Tuzuner BM, Calay Z, et al. (2010). Combined effect of CYP1B1 codon 432 polymorphism and N-acetyltransferase 2 slow acetylator phenotypes in relation to breast cancer in the Turkish population. Anticancer Res. 30: 2885-2889.
PMid:20683028
Ruiter R, Bijl MJ, van Schaik RH, Berns EM, et al. (2010). CYP2C19*2 polymorphism is associated with increased survival in breast cancer patients using tamoxifen. Pharmacogenomics 11: 1367-1375.
http://dx.doi.org/10.2217/pgs.10.112
PMid:21047200
Stingl JC, Parmar S, Huber-Wechselberger A, Kainz A, et al. (2010). Impact of CYP2D6*4 genotype on progression free survival in tamoxifen breast cancer treatment. Curr. Med. Res. Opin. 26: 2535-2542.
http://dx.doi.org/10.1185/03007995.2010.518304
PMid:20849243
Sun J, Sui X, Bradbury JA, Zeldin DC, et al. (2002). Inhibition of vascular smooth muscle cell migration by cytochrome p450 epoxygenase-derived eicosanoids. Circ. Res. 90: 1020-1027.
http://dx.doi.org/10.1161/01.RES.0000017727.35930.33
PMid:12016269
Thompson AM, Johnson A, Quinlan P, Hillman G, et al. (2011). Comprehensive CYP2D6 genotype and adherence affect outcome in breast cancer patients treated with tamoxifen monotherapy. Breast Cancer Res. Treat. 125: 279-287.
http://dx.doi.org/10.1007/s10549-010-1139-x
PMid:20809362