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2011
C. S. Xu, Wang, G. P., Zhang, L. X., Chang, C. F., Zhi, J., and Hao, Y. P., Correlation between liver cancer occurrence and gene expression profiles in rat liver tissue, vol. 10, pp. 3480-3513, 2011.
Aizawa K, Suzuki T, Kada N, Ishihara A, et al. (2004). Regulation of platelet-derived growth factor-A chain by Kruppel-like factor 5: new pathway of cooperative activation with nuclear factor-kappaB. J. Biol. Chem. 279: 70-76. http://dx.doi.org/10.1074/jbc.M306621200 PMid:14573617   Beaudry JB, Pierreux CE, Hayhurst GP, Plumb-Rudewiez N, et al. (2006). Threshold levels of hepatocyte nuclear factor 6 (HNF-6) acting in synergy with HNF-4 and PGC-1alpha are required for time-specific gene expression during liver development. Mol. Cell Biol. 26: 6037-6046. http://dx.doi.org/10.1128/MCB.02445-05 PMid:16880515 PMCid:1592803   Carmeliet P (2005). Angiogenesis in life, disease and medicine. Nature 438: 932-936. http://dx.doi.org/10.1038/nature04478 PMid:16355210   Chen X, Xu C, Zhang F and Ma J (2010). Comparative analysis of expression profiles of chemokines, chemokine receptors, and components of signaling pathways mediated by chemokines in eight cell types during rat liver regeneration. Genome 53: 608-618. http://dx.doi.org/10.1139/G10-040 PMid:20725148   Coussens LM and Werb Z (2002). Inflammation and cancer. Nature 420: 860-867. http://dx.doi.org/10.1038/nature01322 PMid:12490959 PMCid:2803035   Edmondson HA and Steiner PE (1954). Primary carcinoma of the liver: a study of 100 cases among 48,900 necropsies. Cancer 7: 462-503. http://dx.doi.org/10.1002/1097-0142(195405)7:3<462::AID-CNCR2820070308>3.0.CO;2-E   Fernandez M, Semela D, Bruix J, Colle I, et al. (2009). Angiogenesis in liver disease. J. Hepatol. 50: 604-620. http://dx.doi.org/10.1016/j.jhep.2008.12.011 PMid:19157625   Guo GB and Xu CS (2008). Expression profiles of the organic acid metabolism-associated genes during rat liver regeneration. Amino Acids 34: 597-604. http://dx.doi.org/10.1007/s00726-007-0013-6 PMid:18095055   Jackson JR, Seed MP, Kircher CH, Willoughby DA, et al. (1997). The codependence of angiogenesis and chronic inflammation. FASEB J. 11: 457-465. PMid:9194526   Jiang JT, Xu N, Zhang XY and Wu CP (2007). Lipids changes in liver cancer. J. Zhejiang Univ. Sci. B. 8: 398-409. http://dx.doi.org/10.1631/jzus.2007.B0398 PMid:17565510 PMCid:1879165   Lambert G, Jarnoux AL, Pineau T, Pape O, et al. (2006). Fasting induces hyperlipidemia in mice overexpressing proprotein convertase subtilisin kexin type 9: lack of modulation of very-low-density lipoprotein hepatic output by the low-density lipoprotein receptor. Endocrinology 147: 4985-4995. http://dx.doi.org/10.1210/en.2006-0098 PMid:16794006   Lannoy VJ, Decaux JF, Pierreux CE, Lemaigre FP, et al. (2002). Liver glucokinase gene expression is controlled by the onecut transcription factor hepatocyte nuclear factor-6. Diabetologia 45: 1136-1141. http://dx.doi.org/10.1007/s00125-002-0856-z PMid:12189444   Li H, Chen X, Zhang F, Ma J, et al. (2007). Expression patterns of the cell junction-associated genes during rat liver regeneration. J. Genet. Genomics 34: 892-908. http://dx.doi.org/10.1016/S1673-8527(07)60101-5   Ling MT, Lau TC, Zhou C, Chua CW, et al. (2005). Overexpression of Id-1 in prostate cancer cells promotes angiogenesis through the activation of vascular endothelial growth factor (VEGF). Carcinogenesis 26: 1668-1676. http://dx.doi.org/10.1093/carcin/bgi128 PMid:15905202   Liu YF, Zha BS, Zhang HL, Zhu XJ, et al. (2009). Characteristic gene expression profiles in the progression from liver cirrhosis to carcinoma induced by diethylnitrosamine in a rat model. J. Exp. Clin. Cancer Res. 28: 107. http://dx.doi.org/10.1186/1756-9966-28-107 PMid:19638242 PMCid:2729293   Lockhart AC, Tirona RG and Kim RB (2003). Pharmacogenetics of ATP-binding cassette transporters in cancer and chemotherapy. Mol. Cancer Ther. 2: 685-698. PMid:12883042   McFadyen MC and Murray GI (2005). Cytochrome P450 1B1: a novel anticancer therapeutic target. Future Oncol. 1: 259-263. http://dx.doi.org/10.1517/14796694.1.2.259 PMid:16555997   McGuigan K (2006). Studying phenotypic evolution using multivariate quantitative genetics. Mol. Ecol. 15: 883-896. http://dx.doi.org/10.1111/j.1365-294X.2006.02809.x PMid:16599954   Ogawa H, Gomi T, Takusagawa F, Masuda T, et al. (2002). Evidence for a dimeric structure of rat liver serine dehydratase. Int. J. Biochem. Cell Biol. 34: 533-543. http://dx.doi.org/10.1016/S1357-2725(01)00146-7   Rodriguez-Antona C and Ingelman-Sundberg M (2006). Cytochrome P450 pharmacogenetics and cancer. Oncogene 25: 1679-1691. http://dx.doi.org/10.1038/sj.onc.1209377 PMid:16550168   Rosen MB, Lee JS, Ren H, Vallanat B, et al. (2008). Toxicogenomic dissection of the perfluorooctanoic acid transcript profile in mouse liver: evidence for the involvement of nuclear receptors PPAR alpha and CAR. Toxicol. Sci. 103: 46-56. http://dx.doi.org/10.1093/toxsci/kfn025 PMid:18281256   Scibior D, Skrzycki M, Podsiad M and Czeczot H (2008). Glutathione level and glutathione-dependent enzyme activities in blood serum of patients with gastrointestinal tract tumors. Clin. Biochem. 41: 852-858. http://dx.doi.org/10.1016/j.clinbiochem.2008.03.005 PMid:18394427   Vaclavikova R, Hubackova M, Stribrna-Sarmanova J, Kodet R, et al. (2007). RNA expression of cytochrome P450 in breast cancer patients. Anticancer Res. 27: 4443-4450. PMid:18214058   Valles EG, Laughter AR, Dunn CS, Cannelle S, et al. (2003). Role of the peroxisome proliferator-activated receptor alpha in responses to diisononyl phthalate. Toxicology 191: 211-225. http://dx.doi.org/10.1016/S0300-483X(03)00260-9   Vera J and Wolkenhauer O (2008). A system biology approach to understand functional activity of cell communication systems. Methods Cell Biol. 90: 399-415. http://dx.doi.org/10.1016/S0091-679X(08)00817-0   Wang GP and Xu CS (2010). Reference gene selection for real-time RT-PCR in eight kinds of rat regenerating hepatic cells. Mol. Biotechnol. 46: 49-57. http://dx.doi.org/10.1007/s12033-010-9274-5 PMid:20339955   Wang WB, Fan JM, Zhang XL, Xu J, et al. (2009). Serial expression analysis of liver regeneration-related genes in rat regenerating liver. Mol. Biotechnol. 43: 221-231. http://dx.doi.org/10.1007/s12033-009-9199-z PMid:19672731   Wurmbach E, Chen YB, Khitrov G, Zhang W, et al. (2007). Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma. Hepatology 45: 938-947. http://dx.doi.org/10.1002/hep.21622 PMid:17393520   Xu CS and Chang CF (2008). Expression profiles of the genes associated with metabolism and transport of amino acids and their derivatives in rat liver regeneration. Amino Acids 34: 91-102. http://dx.doi.org/10.1007/s00726-007-0576-2 PMid:17713745   Xu CS, Zhang SB, Chen XG and Rahman S (2007). Correlation analysis of liver tumor-associated genes with liver regeneration. World J. Gastroenterol. 13: 3323-3332. PMid:17659671   Xu Z, Chen L, Leung L, Yen TS, et al. (2005). Liver-specific inactivation of the Nrf1 gene in adult mouse leads to nonalcoholic steatohepatitis and hepatic neoplasia. Proc. Natl. Acad. Sci. U. S. A. 102: 4120-4125. http://dx.doi.org/10.1073/pnas.0500660102 PMid:15738389 PMCid:554825   Xue KX (2005). Molecular genetic and epigenetic mechanisms of hepatocarcinogenesis. Ai Zheng 24: 757-768. PMid:15946497
C. S. Xu, Chen, X. G., Chang, C. F., Wang, G. P., Wang, W. B., Zhang, L. X., Zhu, Q. S., and Wang, L., Differential gene expression and functional analysis of pit cells from regenerating rat liver, vol. 10, pp. 678-692, 2011.
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Cell Biol. 5: 836-847. doi:10.1038/nrm1489 PMid:20339955 Wang GP and Xu CS (2010). Reference gene selection for real-time RT-PCR in eight kinds of rat regenerating hepatic cells. Mol. Biotechnol. 46: 49-57. doi:10.1007/s12033-010-9274-5 PMid:17344234 Wang JZ, Du Z, Payattakool R, Yu PS, et al. (2007). A new method to measure the semantic similarity of GO terms. Bioinformatics 23: 1274-1281. doi:10.1093/bioinformatics/btm087 PMid:19672731 Wang WB, Fan JM, Zhang XL, Xu J, et al. (2009). Serial expression analysis of liver regeneration-related genes in rat regenerating liver. Mol. Biotechnol. 43: 221-231. doi:10.1007/s12033-009-9199-z PMid:20448144 Wei H, Wei H, Wang H, Tian Z, et al. (2010). Activation of natural killer cells inhibits liver regeneration in toxin-induced liver injury model in mice via a tumor necrosis factor-alpha-dependent mechanism. Am. J. Physiol. Gastrointest. Liver Physiol. 299: G275-G282. doi:10.1152/ajpgi.00026.2010 PMid:18991167    PMCid:2657316 Xu CS, Shao HY, Liu SS, Qin B, et al. (2009). Possible regulation of genes associated with intracellular signaling cascade in rat liver regeneration. Scand. J. Gastroenterol. 44: 462-470. doi:10.1080/00365520802495560 PMid:19998497    PMCid:2791269 Zheng ZY, Weng SY and Yu Y (2009). Signal molecule-mediated hepatic cell communication during liver regeneration. World J. Gastroenterol. 15: 5776-5783. doi:10.3748/wjg.15.5776