Publications

Found 2 results
Filters: Author is A.A. Uncuoglu  [Clear All Filters]
2011
E. Cabuk, Aydin, Y., and Uncuoglu, A. A., Assessing wheat (Triticum aestivum) genotypes for “Yr” resistance genes using conserved regions and simple-sequence motifs, vol. 10, pp. 3463-3471, 2011.
Akfirat SF, Aydin Y, Ertugrul F, Hasancebi S, et al. (2010). A microsatellite marker for yellow rust resistance in wheat. Communications 38: 203-211.   Akkaya MS, Bhagwat AA and Cregan PB (1992). Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132: 1131-1139. PMid:1459432 PMCid:1205234   Bennett MD and Smith JB (1976). Nuclear DNA amounts in angiosperms. Philos. Trans. R. Soc. Lond. B Biol. Sci. 274: 227-274. http://dx.doi.org/10.1098/rstb.1976.0044 PMid:6977   Ellegren H (2000). Microsatellite mutations in the germline: implications for evolutionary inference. Trends Genet. 16: 551-558. http://dx.doi.org/10.1016/S0168-9525(00)02139-9   Ellegren H (2004). Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445. http://dx.doi.org/10.1038/nrg1348 PMid:15153996   Ercan S, Ertugrul F, Aydin Y, FS Akfirat, et al. (2010). An EST-SSR marker linked with yellow rust resistance in wheat. Biol. Plant. 54: 691-696. http://dx.doi.org/10.1007/s10535-010-0122-z   Guilford P, Prakash S, Zhu JM and Rikkerink E (1997). Microsatellites in Malus x domestica (apple): abundance, polymorphism and cultivar identification. Theor. Appl. Genet. 94: 249-254. http://dx.doi.org/10.1007/s001220050407   Kantety RV, La RM, Matthews DE and Sorrells ME (2002). Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol. Biol. 48: 501-510. http://dx.doi.org/10.1023/A:1014875206165 PMid:11999831   Koike M, Kawaura K, Ogihara Y and Torada A (2006). Isolation and characterization of SSR sequences from the genome and TAC clones of common wheat using the PCR technique. Genome 49: 432-444. http://dx.doi.org/10.1139/G06-001 PMid:16767168   Lagercrantz U, Ellegren H and Andersson L (1993). The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res. 21: 1111-1115. http://dx.doi.org/10.1093/nar/21.5.1111 PMid:8464696 PMCid:309270   Maia LC, Souza VQ, Kopp MM and Carvalho FI (2009). Tandem repeat distribution of gene transcripts in three plant families. Genet. Mol. Biol. 32: 822-833. http://dx.doi.org/10.1590/S1415-47572009005000091 PMid:21637460 PMCid:3036893   McDowell JM and Woffenden BJ (2003). Plant disease resistance genes: recent insights and potential applications. Trends Biotechnol. 21: 178-183. http://dx.doi.org/10.1016/S0167-7799(03)00053-2   McNeal FH, Konzak CF, Smith EP and Tade WS (1971). A Uniform System for Recording and Processing Cereal Research Data. Agricultural Research Service, United States Department of Agriculture, Washington, 42.   Morgante M and Olivieri AM (1993). PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182. http://dx.doi.org/10.1111/j.1365-313X.1993.tb00020.x PMid:8401603   Nakitandwe J, Trognitz F and Trognitz B (2007). Reliable allele detection using SNP-based PCR primers containing Locked Nucleic Acid: application in genetic mapping. Plant Methods 3: 2. http://dx.doi.org/10.1186/1746-4811-3-2 PMid:17286854 PMCid:1802836   Neff BD and Gross MR (2001). Microsatellite evolution in vertebrates: inference from AC dinucleotide repeats. Evolution 55: 1717-1733. PMid:11681728   Nicot N, Chiquet V, Gandon B, Amilhat L, et al. (2004). Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs). Theor. Appl. Genet. 109: 800-805. http://dx.doi.org/10.1007/s00122-004-1685-x PMid:15146317   Parida SK, Anand Raj KK, Dalal V, Singh NK, et al. (2006). Unigene derived microsatellite markers for the cereal genomes. Theor. Appl. Genet. 112: 808-817. http://dx.doi.org/10.1007/s00122-005-0182-1 PMid:16429310   Plaschke J, Ganal MW and Roder MS (1995). Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor. Appl. Genet. 91: 1001-1007. http://dx.doi.org/10.1007/BF00223912   Roder MS, Plaschke J, Konig SU, Borner A, et al. (1995). Abundance, variability and chromosomal location of microsatellites in wheat. Mol. Gen. Genet. 246: 327-333. http://dx.doi.org/10.1007/BF00288605 PMid:7854317   Roder MS, Korzun V, Gill BS and Ganal MW (1998). The physical mapping of microsatellite markers in wheat. Genome 41: 278-283. http://dx.doi.org/10.1139/g98-009   Schlotterer C (2000). Evolutionary dynamics of microsatellite DNA. Chromosoma 109: 365-371. http://dx.doi.org/10.1007/s004120000089 PMid:11072791   Shaheen T, Zafar Y and Rahman M (2010). Detection of Single Nucleotide Polymorphisms in the Conserved ESTs Regions of Gossypium arboretum. Electronic Journal of Biotechnology, Available at [http://dx.doi.org/10.2225/ vol13-issue5-fulltext-3]. Accessed.   Song W and Henry RJ (1995). Molecular analysis of the DNA polymorphism of wild barley (Hordeum spontaneum) germplasm using the polymerase chain reaction. Genet. Res. Crop Evol. 42: 273-280. http://dx.doi.org/10.1007/BF02431262   Stepien L, Mohler V, Bocianowski J and Koczyk G (2007). Assessing genetic diversity of Polish wheat (Triticum aestivum) varieties using microsatellite markers. Genet. Res. Crop Evol. 54: 1499-1506. http://dx.doi.org/10.1007/s10722-006-9140-2   Struss D and Plieske J (1998). The use of microsatellite markers for detection of genetic diversity in barley populations. Theor. Appl. Genet. 97: 308-315. http://dx.doi.org/10.1007/s001220050900   Szewc-McFadden AK, Kresovic S, Bliek SM and Mitchell SE (1996). Identification of polymorphic, conserved simple sequence repeats (SSRs) in cultivated Brassica species. Theor. Appl. Genet. 93: 534-538. http://dx.doi.org/10.1007/BF00417944   Tautz D, Trick M and Dover GA (1986). Cryptic simplicity in DNA is a major source of genetic variation. Nature 322: 652-656. http://dx.doi.org/10.1038/322652a0 PMid:3748144   Temel A, Akfirat SF, Ertugrul F and Yumurtaci A (2008). Yr10 gene polymorphism in bread wheat varieties. Afr. J. Biotechnol. 14: 2328-2332.   Temnykh S, DeClerck G, Lukashova A, Lipovich L, et al. (2001). Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11: 1441-1452. http://dx.doi.org/10.1101/gr.184001 PMid:11483586 PMCid:311097   Weber JL (1990). Informativeness of human (dC-dA)n.(dG-dT)n polymorphisms. Genomics 7: 524-530. http://dx.doi.org/10.1016/0888-7543(90)90195-Z   Weber JL and May PE (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396. PMid:2916582 PMCid:1715443   Weining S and Langridge P (1991). Identification and mapping of polymorphism in cereals based on the polymerase chain reaction. Theor. Appl. Genet. 82: 209-216. http://dx.doi.org/10.1007/BF00226215   Wu KS and Tanksley SD (1993). Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol. Gen. Genet. 241: 225-235. http://dx.doi.org/10.1007/BF00280220 PMid:7901751
O. Karakas, Gurel, F., and Uncuoglu, A. A., Assessment of genetic diversity of wheat genotypes by resistance gene analog-EST markers, vol. 10, pp. 1098-1110, 2011.
Akar T, Yazar S, Donmez E, Avci M, et al. (2007). Current status of national winter wheat breeding in Turkey. J. Agric. Res. 45: 1-9. Akfirat-Senturk F, Aydin Y, Ertugrul F, Hasancebi S, et al. (2010). A microsatellite marker for yellow rust resistance in wheat. Cereal Res. Comm. 38: 203-210. doi:10.1556/CRC.38.2010.2.6 Akkaya MS, Bhagwat AA and Cregan PB (1992). Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132: 1131-1139. PMid:1459432    PMCid:1205234 Altintas S, Toklu F, Kafkas S, Kilian B, et al. (2008). Estimating genetic diversity in durum and bread wheat cultivars from Turkey using AFLP and SAMPL markers. Plant Breed. 127: 9-14. Altschul SF, Gish W, Miller W, Myers EW, et al. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410. PMid:2231712 Asif M, Rahman MU and Zafar Y (2005). DNA fingerprinting studies of some wheat (Triticum aestivum L.) genotypes using random amplified polymorphic DNA (RAPD) analysis. Pak. J. Bot. 37: 271-277. Bennett MD and Leitch IJ (1995). Nuclear DNA amounts in angiosperms. Ann. Bot. 76: 113-176. doi:10.1006/anbo.1995.1085 Bertini CHCM, Schuster I, Sediyama T, Barros EG, et al. (2006). Characterization and genetic diversity analysis of cotton cultivars using microsatellites. Genet. Mol. Biol. 29: 321-329. doi:10.1590/S1415-47572006000200021 Chen XM, Line RF and Leung H (1998). Genome scanning for resistance-gene analogs in rice, barley, and wheat by high-resolution electrophoresis. Theor. Appl. Genet. 97: 345-355. doi:10.1007/s001220050905 Chen XM, Line RF, Hayes PM, Toojinda T, et al. (1999). Mapping barley genes for resistance to stripe rust, leaf rust and scab, using resistance gene analog polymorphism and restriction fragment length polymorphism. Phytopathology 89 (Suppl): S15. Collins NC, Webb CA, Seah S, Ellis JG, et al. (1998). The isolation and mapping of disease resistance gene analogs in maize. Mol. Plant Microbe Interact. 11: 968-978. doi:10.1094/MPMI.1998.11.10.968 PMid:9768514 Ercan S, Ertugrul F, Aydin Y, Akfirat-Senturk F, et al. (2010). An EST-SSR marker linked with yellow rust resistance in wheat. Biol. Plantarum 54: 691-696. doi:10.1007/s10535-010-0122-z Feuillet C, Schachermayr G and Keller B (1997). Molecular cloning of a new receptor-like kinase gene encoded at the Lr10 disease resistance locus of wheat. Plant J. 11: 45-52. doi:10.1046/j.1365-313X.1997.11010045.x PMid:9025301 Fourmann M, Chariot F, Froger N, Delourme R, et al. (2001). Expression, mapping, and genetic variability of Brassica napus disease resistance gene analogues. Genome 44: 1083-1099. PMid:11768212 Geffroy V, Sicard D, de Oliveira JC, Sevignac M, et al. (1999). Identification of an ancestral resistance gene cluster involved in the coevolution process between Phaseolus vulgaris and its fungal pathogen Colletotrichum lindemuthianum. Mol. Plant Microbe Interact. 12: 774-784. doi:10.1094/MPMI.1999.12.9.774 PMid:10494630 Gulbitti-Onarici S, Sumer S and Ozcan S (2007). Determination of phylogenetic relationships between some wild wheat species using amplified fragment length polymorphism (AFLP) markers. Bot. J. Linn. Soc. 153: 67-72. doi:10.1111/j.1095-8339.2007.00585.x He CY, Tian AG, Zhang JS, Zhang ZY, et al. (2003). Isolation and characterization of a full-length resistance gene homolog from soybean. Theor. Appl. Genet. 106: 786-793. PMid:12647051 Jaccard P (1908). Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44: 223-270. Karakas O, Gurel F and Uncuoglu AA (2010). Exploiting a wheat EST database to assess genetic diversity. Genet. Mol. Biol. 33: 719-730. doi:10.1590/S1415-47572010005000094 PMid:21637582    PMCid:3036138 Kovach WL (1999). MVSP - A Multivariate Statistical Package for Windows, Version 3.1. Kovach Computing Services, Pentraeth. Maheswaran M, Subudhi PK, Nandi S, Xu JC, et al. (1997). Polymorphism, distribution, and segregation of AFLP markers in a doubled haploid rice population. Theor. Appl. Genet. 94: 39-45. doi:10.1007/s001220050379 PMid:19352743 McFadden HG, Lehmensiek A and Lagudah ES (2006). Resistance gene analogues of wheat: molecular genetic analysis of ESTs. Theor. Appl. Genet. 113: 987-1002. doi:10.1007/s00122-006-0358-3 PMid:16896714 McIntyre CL, Casu RE, Drenth J, Knight D, et al. (2005). Resistance gene analogues in sugarcane and sorghum and their association with quantitative trait loci for rust resistance. Genome 48: 391-400. doi:10.1139/g05-006 PMid:16121236 McNeal FM, Conzak CF, Smith EP, Tade WS, et al. (1971). A Uniform System for Recording and Processing Cereal Research Data. USDA Agric. Res. Surv., Washington DC, 34-121. Michelmore R (2000). Genomic approaches to plant disease resistance. Curr. Opin. Plant Biol. 3: 125-131. doi:10.1016/S1369-5266(99)00050-3 Nagaoka T and Ogihara Y (1997). Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor. Appl. Genet. 94: 597-602. doi:10.1007/s001220050456 Pakniyat H, Powell W, Baird E, Handley LL, et al. (1997). AFLP variation in wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography. Genome 40: 332-341. doi:10.1139/g97-046 PMid:18464832 Pan Q, Wendel J and Fluhr R (2000). Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J. Mol. Evol. 50: 203-213. PMid:10754062 Plaschke J, Ganal MW and Röder MS (1995). Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor. Appl. Genet. 91: 1001-1007. doi:10.1007/BF00223912 Qin GJ, Chen PD, Gu HY, Feng YG, et al. (2003). Isolation of resistance gene analogs from wheat based on conserved domains of resistance genes. Acta Bot. Sin. 45: 340-345. Schondelmaier J, Steinrücken G and Jung C (1996). Integration of AFLP markers into a linkage map of sugar beet (Beta vulgaris L.). Plant Breed. 115: 231-237. doi:10.1111/j.1439-0523.1996.tb00909.x Shi ZX, Chen XM, Line RF, Leung H, et al. (2001). Development of resistance gene analog polymorphism markers for the Yr9 gene resistance to wheat stripe rust. Genome 44: 509-516. PMid:11550883 Sicard D, Woo SS, Arroyo-Garcia R, Ochoa O, et al. (1999). Molecular diversity at the major cluster of disease resistance genes in cultivated and wild Lactuca spp. Theor. Appl. Genet. 99: 405-418. doi:10.1007/s001220051251 Song W and Henry RJ (1995). Molecular analysis of the DNA polymorphism of wild barley (Hordeum spontaneum) germplasm using the polymerase chain reaction. Genet. Resourc. Crop Evol. 42: 273-280. doi:10.1007/BF02431262 Staskawicz BJ, Ausubel FM, Baker BJ, Ellis JG, et al. (1995). Molecular genetics of plant disease resistance. Science 268: 661-667. doi:10.1126/science.7732374 PMid:7732374 Temel A, Senturk-Akfirat F, Ertugrul F, Yumurtaci A, et al. (2008). Yr10 gene polymorphism in bread wheat varieties. Afr. J. Biotechnol. 7: 2328-2332. Vos P, Hogers R, Bleeker M, Reijans M, et al. (1995). AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414. doi:10.1093/nar/23.21.4407 PMid:7501463    PMCid:307397 Weining S and Langridge P (1991). Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theor. Appl. Genet. 82: 209-216. doi:10.1007/BF00226215 Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. doi:10.1093/nar/18.22.6531 PMid:1979162    PMCid:332606 Wisser RJ, Sun Q, Hulbert SH, Kresovich S, et al. (2005). Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance. Genetics 169: 2277-2293. doi:10.1534/genetics.104.036327 PMid:15716503    PMCid:1449593 Yan GP, Chen XM, Line RF and Wellings CR (2003). Resistance gene-analog polymorphism markers co-segregating with the YR5 gene for resistance to wheat stripe rust. Theor. Appl. Genet. 106: 636-643. PMid:12595992