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2011
R. A. Johnson, Hellens, R. P., and Love, D. R., A transient assay for recombination demonstrates that Arabidopsis SNM1 and XRCC3 enhance non-homologous recombination, vol. 10, pp. 2104-2132, 2011.
Bleuyard JY and White CI (2004). The Arabidopsis homologue of Xrcc3 plays an essential role in meiosis. EMBO J. 23: 439-449. http://dx.doi.org/10.1038/sj.emboj.7600055 PMid:14726957    PMCid:1271761 Bleuyard JY, Gallego ME and White CI (2006). Recent advances in understanding of the DNA double-strand break repair machinery of plants. DNA Repair 5: 1-12. http://dx.doi.org/10.1016/j.dnarep.2005.08.017 PMid:16202663 Brenneman MA, Weiss AE, Nickoloff JA and Chen DJ (2000). XRCC3 is required for efficient repair of chromosome breaks by homologous recombination. Mutat. Res. 459: 89-97. PMid:10725659 Brenneman MA, Wagener BM, Miller CA, Allen C, et al. (2002). XRCC3 controls the fidelity of homologous recombination: roles for XRCC3 in late stages of recombination. Mol. Cell 10: 387-395. http://dx.doi.org/10.1016/S1097-2765(02)00595-6 Britt AB and May GD (2003). Re-engineering plant gene targeting. Trends Plant Sci. 8: 90-95. http://dx.doi.org/10.1016/S1360-1385(03)00002-5 Childs KL, Hamilton JP, Zhu W, Ly E, et al. (2007). The TIGR plant transcript assemblies database. Nucleic Acids Res. 35: D846-D851. http://dx.doi.org/10.1093/nar/gkl785 PMid:17088284    PMCid:1669722 Chung BY, Simons C, Firth AE, Brown CM, et al. (2006). Effect of 5' UTR introns on gene expression in Arabidopsis thaliana. BMC Genomics 7: 120. http://dx.doi.org/10.1186/1471-2164-7-120 PMid:16712733    PMCid:1482700 Coates D, Taliercio EW and Gelvin SB (1987). Chromatin structure of integrated T-DNA in crown gall tumors. Plant Mol. Biol. 8: 159-168. http://dx.doi.org/10.1007/BF00025327 Cotsaftis O and Guiderdoni E (2005). Enhancing gene targeting efficiency in higher plants: rice is on the move. Transgenic Res. 14: 1-14. http://dx.doi.org/10.1007/s11248-004-4066-y PMid:15865044 Di Primo C, Galli A, Cervelli T, Zoppe M, et al. (2005). Potentiation of gene targeting in human cells by expression of Saccharomyces cerevisiae Rad52. Nucleic Acids Res. 33: 4639-4648. http://dx.doi.org/10.1093/nar/gki778 PMid:16106043    PMCid:1187822 Dray E, Siaud N, Dubois E and Doutriaux MP (2006). Interaction between Arabidopsis Brca2 and its partners Rad51, Dmc1, and Dss1. Plant Physiol. 140: 1059-1069. http://dx.doi.org/10.1104/pp.105.075838 PMid:16415210    PMCid:1400560 Durrant WE, Wang S and Dong X (2007). Arabidopsis SNI1 and RAD51D regulate both gene transcription and DNA recombination during the defense response. Proc. Natl. Acad. Sci. U. S. A. 104: 4223-4227. http://dx.doi.org/10.1073/pnas.0609357104 PMid:17360504    PMCid:1820736 Forget AL, Bennett BT and Knight KL (2004). Xrcc3 is recruited to DNA double strand breaks early and independent of Rad51. J. Cell. Biochem. 93: 429-436. http://dx.doi.org/10.1002/jcb.20232 PMid:15372620 Fuller LF and Painter RB (1988). A Chinese hamster ovary cell line hypersensitive to ionizing radiation and deficient in repair replication. Mutat. Res. 193: 109-121. PMid:3347204 Gelvin SB (2003). Agrobacterium-mediated plant transformation: the biology behind the “gene-jockeying” tool. Microbiol. Mol. Biol. Rev. 67: 16-37, table. http://dx.doi.org/10.1128/MMBR.67.1.16-37.2003 PMid:12626681    PMCid:150518 Gorbunova V, Avivi-Ragolski N, Shalev G, Kovalchuk I, et al. (2000). A new hyperrecombinogenic mutant of Nicotiana tabacum. Plant J. 24: 601-611. http://dx.doi.org/10.1046/j.1365-313x.2000.00905.x PMid:11123799 Hanin M, Mengiste T, Bogucki A and Paszkowski J (2000). Elevated levels of intrachromosomal homologous recombination in Arabidopsis overexpressing the MIM gene. Plant J. 24: 183-189. http://dx.doi.org/10.1046/j.1365-313x.2000.00867.x PMid:11069693 Hellens RP, Allan AC, Friel EN, Bolitho K, et al. (2005). Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants. Plant Methods 1: 13. http://dx.doi.org/10.1186/1746-4811-1-13 PMid:16359558    PMCid:1334188 Hemphill AW, Bruun D, Thrun L, Akkari Y, et al. (2008). Mammalian SNM1 is required for genome stability. Mol. Genet. Metab. 94: 38-45. http://dx.doi.org/10.1016/j.ymgme.2007.11.012 PMid:18180189    PMCid:2413150 Hrouda M and Paszkowski J (1994). High fidelity extrachromosomal recombination and gene targeting in plants. Mol. Gen. Genet. 243: 106-111. http://dx.doi.org/10.1007/BF00283882 Iida S and Terada R (2005). Modification of endogenous natural genes by gene targeting in rice and other higher plants. Plant Mol. Biol. 59: 205-219. http://dx.doi.org/10.1007/s11103-005-2162-x PMid:16217613 Ilnytskyy Y, Boyko A and Kovalchuk I (2004). Luciferase-based transgenic recombination assay is more sensitive than beta-glucoronidase-based. Mutat. Res. 559: 189-197. PMid:15066586 Kim SI and Gelvin SB (2007). Genome-wide analysis of Agrobacterium T-DNA integration sites in the Arabidopsis genome generated under non-selective conditions. Plant J. 51: 779-791. http://dx.doi.org/10.1111/j.1365-313X.2007.03183.x PMid:17605756 Kimura S, Saotome A, Uchiyama Y, Mori Y, et al. (2005). The expression of the rice (Oryza sativa L.) homologue of Snm1 is induced by DNA damages. Biochem. Biophys. Res. Commun. 329: 668-672. http://dx.doi.org/10.1016/j.bbrc.2005.01.161 PMid:15737637 Kurumizaka H, Ikawa S, Nakada M, Eda K, et al. (2001). Homologous-pairing activity of the human DNA-repair proteins Xrcc3.Rad51C. Proc. Natl. Acad. Sci. U. S. A. 98: 5538-5543. http://dx.doi.org/10.1073/pnas.091603098 PMid:11331762    PMCid:33248 Li L, Santerre-Ayotte S, Boivin EB, Jean M, et al. (2004). A novel reporter for intrachromosomal homoeologous recombination in Arabidopsis thaliana. Plant J. 40: 1007-1015. http://dx.doi.org/10.1111/j.1365-313X.2004.02270.x PMid:15584964 Li X and Moses RE (2003). The β-lactamase motif in Snm1 is required for repair of DNA double-strand breaks caused by interstrand crosslinks in S. cerevisiae. DNA Repair 2: 121-129. http://dx.doi.org/10.1016/S1568-7864(02)00192-1 Li X, Hejna J and Moses RE (2005). The yeast Snm1 protein is a DNA 5’-exonuclease. DNA Repair 4: 163-170. http://dx.doi.org/10.1016/j.dnarep.2004.08.012 PMid:15590324 Lyznik LA, McGee JD, Tung PY, Bennetzen JL, et al. (1991). Homologous recombination between plasmid DNA molecules in maize protoplasts. Mol. Gen. Genet. 230: 209-218. http://dx.doi.org/10.1007/BF00290670 Molinier J, Stamm ME and Hohn B (2004). SNM-dependent recombinational repair of oxidatively induced DNA damage in Arabidopsis thaliana. EMBO Rep. 5: 994-999. http://dx.doi.org/10.1038/sj.embor.7400256 PMid:15448639    PMCid:1299156 Orel N and Puchta H (2003). Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: possible implications for genome evolution. Plant Mol. Biol. 51: 523-531. http://dx.doi.org/10.1023/A:1022324205661 PMid:12650618 Osakabe K, Yoshioka T, Ichikawa H and Toki S (2002). Molecular cloning and characterization of RAD51-like genes from Arabidopsis thaliana. Plant Mol. Biol. 50: 71-81. http://dx.doi.org/10.1023/A:1016047231597 Puchta H and Hohn B (1991). A transient assay in plant cells reveals a positive correlation between extrachromosomal recombination rates and length of homologous overlap. Nucleic Acids Res. 19: 2693-2700. http://dx.doi.org/10.1093/nar/19.10.2693 PMid:2041745    PMCid:328188 Reiss B, Klemm M, Kosak H and Schell J (1996). RecA protein stimulates homologous recombination in plants. Proc. Natl. Acad. Sci. U. S. A. 93: 3094-3098. http://dx.doi.org/10.1073/pnas.93.7.3094 Schuermann D, Molinier J, Fritsch O and Hohn B (2005). The dual nature of homologous recombination in plants. Trends Genet. 21: 172-181. http://dx.doi.org/10.1016/j.tig.2005.01.002 PMid:15734576 Shaked H, Melamed-Bessudo C and Levy AA (2005). High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene. Proc. Natl. Acad. Sci. U. S. A. 102: 12265-12269. http://dx.doi.org/10.1073/pnas.0502601102 PMid:16093317    PMCid:1189313 Shaked H, Avivi-Ragolsky N and Levy AA (2006). Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination. Genetics 173: 985-994. http://dx.doi.org/10.1534/genetics.105.051664 PMid:16547115    PMCid:1526515 Shalev G, Sitrit Y, Avivi-Ragolski N, Lichtenstein C, et al. (1999). Stimulation of homologous recombination in plants by expression of the bacterial resolvase RuvC. Proc. Natl. Acad Sci U. S. A. 96: 7398-7402. http://dx.doi.org/10.1073/pnas.96.13.7398 Tebbs RS, Zhao Y, Tucker JD, Scheerer JB, et al. (1995). Correction of chromosomal instability and sensitivity to diverse mutagens by a cloned cDNA of the XRCC3 DNA repair gene. Proc. Natl. Acad. Sci. U. S. A. 92: 6354-6358. http://dx.doi.org/10.1073/pnas.92.14.6354 Ursin VM, Irvine JM, Hiatt WR and Shewmaker CK (1991). Developmental analysis of elongation factor-1 alpha expression in transgenic tobacco. Plant Cell 3: 583-591. PMid:1841719    PMCid:160026