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2011
H. G. Wang, Wang, X. F., Jing, X. Y., Li, Z., Zhang, Y., and Lv, Z. J., Effect of mutations in a simian virus 40 PolyA signal enhancer on green fluorescent protein reporter gene expression, vol. 10, pp. 1866-1883, 2011.
Cai L, Fritz D, Stefanovic L and Stefanovic B (2010). Binding of LARP6 to the conserved 5' stem-loop regulates translation of mRNAs encoding type I collagen. J. Mol. Biol. 395: 309-326. http://dx.doi.org/10.1016/j.jmb.2009.11.020 PMid:19917293    PMCid:2826804 Chou SH, Tseng YY and Chu BY (1999). Stable formation of a pyrimidine-rich loop hairpin in a cruciform promoter. J. Mol. Biol. 292: 309-320. http://dx.doi.org/10.1006/jmbi.1999.3066 PMid:10493877 Costa FF (2008). Non-coding RNAs, epigenetics and complexity. Gene 410: 9-17. http://dx.doi.org/10.1016/j.gene.2007.12.008 PMid:18226475 Costantini M and Bernardi G (2008). Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes. Gene 410: 241-248. http://dx.doi.org/10.1016/j.gene.2007.12.016 PMid:18252269 Dai X, Kloster M and Rothman-Denes LB (1998). Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters. J. Mol. 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Nature 428: 529-535. http://dx.doi.org/10.1038/nature02399 PMid:15057824 Kang H, Feng M, Schroeder ME, Giedroc DP, et al. (2006). Putative cis-acting stem-loops in the 5' untranslated region of the severe acute respiratory syndrome coronavirus can substitute for their mouse hepatitis virus counterparts. J. Virol. 80: 10600-10614. http://dx.doi.org/10.1128/JVI.00455-06 PMid:16920822    PMCid:1641749 Kuznetsov SV, Ren CC, Woodson SA and Ansari A (2008). Loop dependence of the stability and dynamics of nucleic acid hairpins. Nucleic Acids Res. 36: 1098-1112. http://dx.doi.org/10.1093/nar/gkm1083 PMid:18096625    PMCid:2275088 Lander ES, Linton LM, Birren B, Nusbaum C, et al. (2001). Initial sequencing and analysis of the human genome. Nature 409: 860-921. http://dx.doi.org/10.1038/35057062 PMid:11237011 Li L, Kang H, Liu P, Makkinje N, et al. (2008). Structural lability in stem-loop 1 drives a 5' UTR-3' UTR interaction in coronavirus replication. J. Mol. Biol. 377: 790-803. http://dx.doi.org/10.1016/j.jmb.2008.01.068 PMid:18289557    PMCid:2652258 Li Y, Ho ES, Gunderson SI and Kiledjian M (2009). Mutational analysis of a Dcp2-binding element reveals general enhancement of decapping by 5'-end stem-loop structures. Nucleic Acids Res. 37: 2227-2237. http://dx.doi.org/10.1093/nar/gkp087 PMid:19233875    PMCid:2673433 Lu ZJ, Zhai Y, Wang XF and Song SX (2003). DNA sequence composition on human X chromosome differing from that on chromosomes 6,7,8,10,11 and 12. Genet. Sin. 30: 1051-1060. Nelson MJ and Green BR (2005). Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles. Gene 358: 102-110. http://dx.doi.org/10.1016/j.gene.2005.05.024 PMid:16043313 Nickens DG and Hardy RW (2008). Structural and functional analyses of stem-loop 1 of the Sindbis virus genome. Virology 370: 158-172. http://dx.doi.org/10.1016/j.virol.2007.08.006 PMid:17900652 Rosskopf JJ, Upton JH 3rd, Rodarte L, Romero TA, et al. (2010). A 3' terminal stem-loop structure in Nodamura virus RNA2 forms an essential cis-acting signal for RNA replication. Virus Res. 150: 12-21. http://dx.doi.org/10.1016/j.virusres.2010.02.006 PMid:20176063    PMCid:3017585 Sean P, Nguyen JHC and Semler BL (2009). Altered interactions between stem-loop IV within the 5' noncoding region of coxsackievirus RNA and poly(rC) binding protein 2: effects on IRES-mediated translation and viral infectivity. Virology 389: 45-58. http://dx.doi.org/10.1016/j.virol.2009.03.012 PMid:19446305    PMCid:2694229 Ueno M, Kodama EN, Shimura K, Sakurai Y, et al. (2009). Synonymous mutations in stem-loop III of Rev responsive elements enhance HIV-1 replication impaired by primary mutations for resistance to enfuvirtide. Antiviral Res. 82: 67-72. http://dx.doi.org/10.1016/j.antiviral.2009.02.002 PMid:19428597 Wang XF, Wang X, Liu J, Feng J, et al. (2009a). Alu tandem sequences inhibit GFP gene expression by triggering chromatin wrapping. Genes Genom. 31: 209-215. http://dx.doi.org/10.1007/BF03191192 Wang XF, Jin X, Wang X, Liu J, et al. (2009b). Effects of L1-ORF2 fragments on green fluorescent protein gene expression. Genet. Mol. Biol. 32: 688-696. http://dx.doi.org/10.1590/S1415-47572009005000068 PMid:21637438    PMCid:3036906 Xu ZL, Mizuguchi H, Ishii-Watabe A, Uchida E, et al. (2001). Optimization of transcriptional regulatory elements for constructing plasmid vectors. Gene 272: 149-156. http://dx.doi.org/10.1016/S0378-1119(01)00550-9 Yin K, Wang X, Ma H, Xie Y, et al. (2010). Impact of copy number of distinct SV40PolyA segments on expression of a GFP reporter gene. Sci. China Life Sci. 53: 606-612. http://dx.doi.org/10.1007/s11427-010-0110-8 PMid:20596944 Yu L and Markoff L (2005). The topology of bulges in the long stem of the flavivirus 3'stem-loop is a major determinant of RNA replication competence. J. Virol. 79: 2309-2324. http://dx.doi.org/10.1128/JVI.79.4.2309-2324.2005 PMid:15681432    PMCid:546603