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“Identification of genes encoding hypothetical proteins in open-reading frame expressed sequence tags from mammalian stages of Trypanosoma cruzi”, vol. 10, pp. 1589-1630, 2011.
, Acosta-Serrano A, Almeida IC, Freitas-Junior LH, Yoshida N, et al. (2001). The mucin-like glycoprotein super-family of Trypanosoma cruzi: structure and biological roles. Mol. Biochem. Parasitol. 114: 143-150.
http://dx.doi.org/10.1016/S0166-6851(01)00245-6
Aguero F, Zheng W, Weatherly DB, Mendes P, et al. (2006). TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi. Nucleic Acids Res. 34: D428-D431.
http://dx.doi.org/10.1093/nar/gkj108
PMid:16381904 PMCid:1347470
Albertti LA, Macedo AM, Chiari E, Andrews NW, et al. (2010). Role of host lysosomal associated membrane protein (LAMP) in Trypanosoma cruzi invasion and intracellular development. Microb. Infect. 12: 784-789.
http://dx.doi.org/10.1016/j.micinf.2010.05.015
PMid:20561595 PMCid:2934878
Arner E, Kindlund E, Nilsson D, Farzana F, et al. (2007). Database of Trypanosoma cruzi repeated genes: 20,000 additional gene variants. BMC Genom. 8: 391.
http://dx.doi.org/10.1186/1471-2164-8-391
PMid:17963481 PMCid:2204015
Atwood JA III, Weatherly DB, Minning TA, Bundy B, et al. (2005). The Trypanosoma cruzi proteome. Science 309: 473-476.
http://dx.doi.org/10.1126/science.1110289
PMid:16020736
Baptista CS, Vencio RZ, Abdala S, Carranza JC, et al. (2006). Differential transcription profiles in Trypanosoma cruzi associated with clinical forms of Chagas disease: Maxicircle NADH dehydrogenase subunit 7 gene truncation in asymptomatic patient isolates. Mol. Biochem. Parasitol. 150: 236-248.
http://dx.doi.org/10.1016/j.molbiopara.2006.08.008
PMid:16996148
Bartholomeu DC, Cerqueira GC, Leao AC, daRocha WD, et al. (2009). Genomic organization and expression profile of the mucin-associated surface protein (masp) family of the human pathogen Trypanosoma cruzi. Nucleic Acids Res. 37: 3407-3417.
http://dx.doi.org/10.1093/nar/gkp172
PMid:19336417 PMCid:2691823
Buscaglia CA, Campo VA, Di Noia JM, Torrecilhas AC, et al. (2004). The surface coat of the mammal-dwelling infective trypomastigote stage of Trypanosoma cruzi is formed by highly diverse immunogenic mucins. J. Biol. Chem. 279: 15860-15869.
http://dx.doi.org/10.1074/jbc.M314051200
PMid:14749325
Camargo AA, Samaia HP, Dias-Neto E, Simao DF, et al. (2001). The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome. Proc. Natl. Acad. Sci. U. S. A. 98: 12103-12108.
http://dx.doi.org/10.1073/pnas.201182798
PMid:11593022 PMCid:59775
Campbell DA, Westenberger SJ and Sturm NR (2004). The determinants of Chagas disease: connecting parasite and host genetics. Curr. Mol. Med. 4: 549-562.
http://dx.doi.org/10.2174/1566524043360249
PMid:15357207
Carranza JC, Valadares HM, DâAvila DA, Baptista RP, et al. (2009). Trypanosoma cruzi maxicircle heterogeneity in Chagas disease patients from Brazil. Int. J. Parasitol. 39: 963-973.
http://dx.doi.org/10.1016/j.ijpara.2009.01.009
PMid:19504756
Chou HH and Holmes MH (2001). DNA sequence quality trimming and vector removal. Bioinformatics. 17: 1093-1104.
http://dx.doi.org/10.1093/bioinformatics/17.12.1093
PMid:11751217
Dias NE, Caballero OL, Vidigal TH, Pena SD, et al. (1997). Partially degraded DNA of parasitological interest serves as an adequate template for the production of random amplified polymorphic DNAs (RAPDs). J. Parasitol. 83: 753-755.
http://dx.doi.org/10.2307/3284257
Dias NE, Correa RG, Verjovski-Almeida S, Briones MR, et al. (2000). Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Proc. Natl. Acad. Sci. U. S. A. 97: 3491-3496.
http://dx.doi.org/10.1073/pnas.97.7.3491
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, et al. (2005). The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science 309: 409-415.
http://dx.doi.org/10.1126/science.1112631
PMid:16020725
Ewing B and Green P (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
PMid:9521922
Ferella M, Nilsson D, Darban H, Rodrigues C, et al. (2008). Proteomics in Trypanosoma cruzi - localization of novel proteins to various organelles. Proteomics 8: 2735-2749.
http://dx.doi.org/10.1002/pmic.200700940
PMid:18546153 PMCid:2706665
Fernandes AB, Neira I, Ferreira AT and Mortara RA (2006). Cell invasion by Trypanosoma cruzi amastigotes of distinct infectivities: studies on signaling pathways. Parasitol. Res. 100: 59-68.
http://dx.doi.org/10.1007/s00436-006-0236-6
PMid:16791632
Frasch AC (2000). Functional diversity in the trans-sialidase and mucin families in Trypanosoma cruzi. Parasitol. Today 16: 282-286.
http://dx.doi.org/10.1016/S0169-4758(00)01698-7
Gao W, Wortis HH and Pereira MA (2002). The Trypanosoma cruzi trans-sialidase is a T cell-independent B cell mitogen and an inducer of non-specific Ig secretion. Int. Immunol. 14: 299-308.
http://dx.doi.org/10.1093/intimm/14.3.299
PMid:11867566
Grandgenett PM, Coughlin BC, Kirchhoff LV and Donelson JE (2000). Differential expression of GP63 genes in Trypanosoma cruzi. Mol. Biochem. Parasitol. 110: 409-415.
http://dx.doi.org/10.1016/S0166-6851(00)00275-9
Huang X and Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877.
http://dx.doi.org/10.1101/gr.9.9.868
PMid:10508846 PMCid:310812
Kulkarni MM, Olson CL, Engman DM and McGwire BS (2009). Trypanosoma cruzi GP63 proteins undergo stage-specific differential posttranslational modification and are important for host cell infection. Infect. Immun. 77: 2193-2200.
http://dx.doi.org/10.1128/IAI.01542-08
PMid:19273559 PMCid:2681764
Lander N, Bernal C, Diez N, Anez N, et al. (2010). Localization and developmental regulation of a dispersed gene family 1 protein in Trypanosoma cruzi. Infect. Immun. 78: 231-240.
http://dx.doi.org/10.1128/IAI.00780-09
PMid:19841080 PMCid:2798230
Macedo AM and Pena SD (1998). Genetic variability of Trypanosoma cruzi: Implications for the pathogenesis of Chagas disease. Parasitol. Today 14: 119-124.
http://dx.doi.org/10.1016/S0169-4758(97)01179-4
Macedo AM, Martins MS, Chiari E and Pena SD (1992). DNA fingerprinting of Trypanosoma cruzi: a new tool for characterization of strains and clones. Mol. Biochem. Parasitol. 55: 147-153.
http://dx.doi.org/10.1016/0166-6851(92)90135-7
Macedo AM, Machado CR, Oliveira RP and Pena SD (2004). Trypanosoma cruzi: genetic structure of populations and relevance of genetic variability to the pathogenesis of Chagas disease. Mem. Inst. Oswaldo Cruz 99: 1-12.
http://dx.doi.org/10.1590/S0074-02762004000100001
Martins C, Baptista CS, Ienne S, Cerqueira GC, et al. (2008). Genomic organization and transcription analysis of the 195- bp satellite DNA in Trypanosoma cruzi. Mol. Biochem. Parasitol. 160: 60-64.
http://dx.doi.org/10.1016/j.molbiopara.2008.03.004
PMid:18440654
Miles MA, Llewellyn MS, Lewis MD, Yeo M, et al. (2009). The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future. Parasitology 136: 1509- 1528.
http://dx.doi.org/10.1017/S0031182009990977
PMid:19691868
Minning TA, Weatherly DB, Atwood J, III, Orlando R, et al. (2009). The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi. BMC Genom. 10: 370.
http://dx.doi.org/10.1186/1471-2164-10-370
PMid:19664227 PMCid:2907688
Pereira-Chioccola VL, Acosta-Serrano A, Correia dA, I, Ferguson MA, et al. (2000). Mucin-like molecules form a negatively charged coat that protects Trypanosoma cruzi trypomastigotes from killing by human anti-alpha-galactosyl antibodies. J. Cell Sci. 113 (Pt 7): 1299-1307.
PMid:10704380
Pinto Dias JC (2006). The treatment of Chagas disease (South American trypanosomiasis). Ann. Intern. Med. 144: 772-774.
PMid:16702594
Pitcovsky TA, Buscaglia CA, Mucci J and Campetella O (2002). A functional network of intramolecular cross-reacting epitopes delays the elicitation of neutralizing antibodies to Trypanosoma cruzi trans-sialidase. J. Infect. Dis. 186: 397-404.
http://dx.doi.org/10.1086/341463
PMid:12134236
Teixeira SMR and Da Rocha WD (2003). Control of gene expression and genetic manipulation in Trypanosomatidae. Genet. Mol. Res. 2: 148-158.
PMid:12917811
Tibayrenc M (1998). Genetic epidemiology of parasitic protozoa and other infectious agents: the need for an integrated approach. Int. J. Parasitol. 28: 85-104.
http://dx.doi.org/10.1016/S0020-7519(97)00180-X
Tomazi L, Kawashita SY, Pereira PM, Zingales B, et al. (2009). Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic. Genet. Mol. Res. 8: 458-476.
http://dx.doi.org/10.4238/vol8-2gmr591
PMid:19551633
Weatherly DB, Boehlke C and Tarleton RL (2009). Chromosome level assembly of the hybrid Trypanosoma cruzi genome. BMC Genom. 10: 255.
http://dx.doi.org/10.1186/1471-2164-10-255
PMid:19486522 PMCid:2698008
Westenberger SJ, Cerqueira GC, El-Sayed NM, Zingales B, et al. (2006). Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC Genom. 7: 60.
http://dx.doi.org/10.1186/1471-2164-7-60
PMid:16553959 PMCid:1559615
Zingales B, Pereira ME, Almeida KA, Umezawa ES, et al. (1997). Biological parameters and molecular markers of clone CL Brener - the reference organism of the Trypanosoma cruzi genome project. Mem. Inst. Oswaldo Cruz 92: 811- 814.
http://dx.doi.org/10.1590/S0074-02761997000600016
Zingales B, Andrade SG, Briones MR, Campbell DA, et al. (2009). A new consensus for Trypanosoma cruzi intraspecific nomenclature: second revision meeting recommends TcI to TcVI. Mem. Inst. Oswaldo Cruz 104: 1051-1054.
http://dx.doi.org/10.1590/S0074-02762009000700021