Publications
Found 1 results
Filters: Author is L.C. Figueirêdo [Clear All Filters]
“Identification and isolation of full-length cDNA sequences by sequencing and analysis of expressed sequence tags from guarana (Paullinia cupana)”, vol. 10, pp. 1188-1199, 2011.
, Ângelo PCS, Nunes-Silva CG, Brígido MM, Azevedo JSN, et al. (2008). Guarana (Paullinia cupana var. sorbilis), an anciently consumed stimulant from the Amazon rain forest: the seeded-fruit transcriptome. Plant Cell Rep. 27: 117- 124.
PMid:17917729
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, et al. (2009). GenBank. Nucleic Acids Res. 37: D26-D31.
doi:10.1093/nar/gkn723
PMid:18940867 PMCid:2686462
DeMarco R and Verjovski-Almeida S (2008). Expressed Sequence Tags (ESTs) and Gene Discovery: Schistosoma mansoni. In: Bioinformatics in Tropical Disease Research. Available at [http://ncbi.nlm.nih.gov/bookshelf/ br.fugi?book=bioinfo]. Accessed May 20, 2010.
Edgar RC (2004). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
doi:10.1186/1471-2105-5-113
PMid:15318951 PMCid:517706
Faria-Campos AC, Moratelli FS, Mendes IK, Ortolani PL, et al. (2006). Production of full-length cDNA sequences by sequencing and analysis of expressed sequence tags from Schistosoma mansoni. Mem. Inst. Oswaldo Cruz 101 (Suppl 1): 161-165.
doi:10.1590/S0074-02762006000900026
Felsenstein J (2008). Phylip (Phylogeny Inference Package) Version 3.68. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle. Available at [http://evolution.genetics.washington.edu/phylip.html]. Accessed December 18, 2009.
Freitas DV (2009). Caracterização Genética e Molecular do Guaranazeiro (Paullinia cupana “sorbilis”). Doctoral thesis, Universidade Federal do Amazonas, Manaus.
Fuchs R (2002). From sequence to biology: the impact on bioinformatics. Bioinformatics 18: 505-506.
doi:10.1093/bioinformatics/18.4.505
PMid:12016047
Galtier N, Gouy M and Gautier C (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12: 543-548.
PMid:9021275
Gilchrist MJ, Zorn AM, Voigt J, Smith JC, et al. (2004). Defining a large set of full-length clones from a Xenopus tropicalis EST project. Dev. Biol. 271: 498-516.
doi:10.1016/j.ydbio.2004.04.023
PMid:15223350
Guindon S and Gascuel O (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52: 696-704.
doi:10.1080/10635150390235520
PMid:14530136
Ishida M, Kitao N, Mizuno K, Tanikawa N, et al. (2009). Occurrence of theobromine synthase genes in purine alkaloid-free species of Camellia plants. Planta 229: 559-568.
doi:10.1007/s00425-008-0847-5
PMid:19018565
Lu G, Zhang S and Fang X (2008). An improved string composition method for sequence comparison BMC Bioinformatics 9 (Suppl 6): S15.
doi:10.1186/1471-2105-9-S6-S15
PMid:18541050 PMCid:2423438
Luscombe NM, Greenbaum D and Gerstein M (2001). What is Bioinformatics? An Introduction and Overview. Yearbook of Medical Informatics, 83-99. Available at [http://www.ebi.ac.uk/luscombe/publications.html]. Accessed June 22, 2009.
Malone G, Zimmer PD, Meneghello GE, Binneck E, et al. (2006). Gene prospection in cDNA libraries. Rev. Bras. Agrocienc. 12: 07-13.
McCarthy AA and McCarthy JG (2007). The structure of two N-methyltransferases from the caffeine biosynthetic pathway. Plant Physiol. 144: 879-889.
doi:10.1104/pp.106.094854
PMid:17434991 PMCid:1914188
Nanjo T, Sakurai T, Totoki Y, Toyoda A, et al. (2007). Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones. BMC Genomics 8: 448.
doi:10.1186/1471-2164-8-448
PMid:18053163 PMCid:2222646
Pôle Bioinformatique Lyonnais (PBIL) (2009). SeaView Version 4.0. Available at [http://pbil.univ-lyon1.fr/software/seaview.html]. Accessed August 10, 2009.
Salzberg SL (2007). Genome re-annotation: a wiki solution? Genome Biol. 8: 102.
PMid:17274839 PMCid:1839116
Uefuji H, Ogita S, Yamaguchi Y, Koizumi N, et al. (2003). Molecular cloning and functional characterization of three distinct N-methyltransferases involved in the caffeine biosynthetic pathway in coffee plants. Plant Physiol. 132: 372-380.
doi:10.1104/pp.102.019679
PMid:12746542 PMCid:166982
Yoneyama N, Morimoto H, Ye CX, Ashihara H, et al. (2006). Substrate specificity of N-methyltransferase involved in purine alkaloids synthesis is dependent upon one amino acid residue of the enzyme. Mol. Genet. Genomics 275: 125-135.
doi:10.1007/s00438-005-0070-z
PMid:16333668