Publications

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2012
J. A. F. Diniz-Filho, Collevatti, R. G., Chaves, L. J., Soares, T. N., Nabout, J. C., Rangel, T. F., Melo, D. B., Lima, J. S., and Telles, M. P. C., Geographic shifts in climatically suitable areas and loss of genetic variability in Dipteryx alata (“Baru” Tree; Fabaceae), vol. 11, pp. 1618-1626, 2012.
Allouche O, Tsoar A and Kadmon R (2006). Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (TSS). J. Appl. Ecol. 43: 1223-1232. http://dx.doi.org/10.1111/j.1365-2664.2006.01214.x   Alsos IG, Alm T, Normand S and Brochmann C (2009). Past and future range shifts and loss of diversity in dwarf willow (Salix herbacea L.) inferred from genetics, fossils and modeling. Glob. Ecol. Biogeogr. 18: 223-239. http://dx.doi.org/10.1111/j.1466-8238.2008.00439.x   Araújo MB and New M (2007). Ensemble forecasting of species distributions. Trends Ecol. Evol. 22: 42-47. http://dx.doi.org/10.1016/j.tree.2006.09.010 PMid:17011070   Collevatti RG, Nabout JC and Diniz-Filho JAF (2011a). Range shift and loss of genetic diversity under climate change in Caryocar brasiliense, a Neotropical tree species. Tree Genet. Genomes 7: 1237-1247. http://dx.doi.org/10.1007/s11295-011-0409-z   Collevatti RG, Grattapaglia D and Hay JD (2011b). Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci. Mol. Ecol. 10: 349-356. http://dx.doi.org/10.1046/j.1365-294x.2001.01226.x   Cornuet JM and Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014. PMid:8978083 PMCid:1207747   Diniz-Filho JAF (2004). Phylogenetic diversity and conservation priorities under distinct models of phenotypic evolution. Conserv. Biol. 18: 698-704. http://dx.doi.org/10.1111/j.1523-1739.2004.00260.x   Diniz-Filho JAF and Bini LM (2008). Macroecology, global change and the shadow of forgotten ancestors. Glob. Ecol. Biogeogr. 17: 11-17.   Diniz-Filho JAF, Bini LM, Rangel TF, Loyola RD, et al. (2009a). Partitioning and mapping uncertainties in ensembles of forecasts of species turnover under climate change. Ecography 32: 897-906. http://dx.doi.org/10.1111/j.1600-0587.2009.06196.x   Diniz-Filho JAF, Oliveira G, Bini LM, Loyola RD, et al. (2009b). Conservation biogeography and climate change in Brazilian Cerrado. Nat. Conserv. 7: 8-18.   Diniz-Filho JAF, Ferro VG, Santos T, Nabout JC, et al. (2010a). The three phases of the ensemble forecasting of niche models: geographic range and shifts in climatically suitable areas of Utetheisa ornatrix (Lepidoptera, Arctiidae). Rev. Bras. Entomol. 54: 339-349. http://dx.doi.org/10.1590/S0085-56262010000300001   Diniz-Filho JAF, Nabout JC, Bini LM, Loyola RD, et al. (2010b). Ensemble forecasting shifts in climatically suitable areas for Tropidacris cristata (Orthoptera: Acridoidea: Romaleidae). Insect Conserv. Divers. 3: 213-221.   Elith J and Graham CH (2009). Do they? How do they? Why do they differ? On finding reasons for differing performances of species distribution models. Ecography 32: 66-77. http://dx.doi.org/10.1111/j.1600-0587.2008.05505.x   Kerr JT, Kharouba HM and Currie DJ (2007). The macroecological contribution to global change solutions. Science 316: 1581-1584. http://dx.doi.org/10.1126/science.1133267 PMid:17569854   Luikart G, Allendorf FW, Cornuet JM and Sherwin WB (1998). Distortion of allele frequency distributions provides a test for recent population bottlenecks. J. Hered. 89: 238-247. http://dx.doi.org/10.1093/jhered/89.3.238 PMid:9656466   Marini MA, Barbet-Massin M, Lopes LE and Jiguet F (2009). Predicted climate-driven bird distribution changes and forecasted conservation conflicts in a Neotropical savanna. Conserv. Biol. 23: 1558-1567. http://dx.doi.org/10.1111/j.1523-1739.2009.01258.x PMid:19500118   Marmion M, Parviainen M, Luoto M, Heikkinen RK, et al. (2009). Evaluation of consensus methods in predictive species distribution modeling. Divers. Distrib. 15: 59-69. http://dx.doi.org/10.1111/j.1472-4642.2008.00491.x   Nabout JC, Soares TN, Diniz-Filho JAF, De Marco P Jr, et al. (2010). Combining multiple models to predict the geographical distribution of the Baru tree (Dipteryx alata Vogel) in the Brazilian Cerrado. Braz. J. Biol. 70: 911-919. http://dx.doi.org/10.1590/S1519-69842010000500001 PMid:21180894   Nabout JC, Oliveira G, Magalhães MR, Terribile LC, et al. (2011). Global climate change and the production of "Pequi" fruits (Caryocar brasiliense) in the Brazilian Cerrado. Nat. Conserv. 9: 55-60. http://dx.doi.org/10.4322/natcon.2011.006   Parmesan C (2006). Ecological and evolutionary responses to recent climate change. Annu. Rev. Ecol. Evol. Syst. 37: 637-669. http://dx.doi.org/10.1146/annurev.ecolsys.37.091305.110100   Purvis A, Agapow PM, Gittleman JL and Mace GM (2000). Nonrandom extinction and the loss of evolutionary history. Science 288: 328-330. http://dx.doi.org/10.1126/science.288.5464.328 PMid:10764644   Sechrest W, Brooks TM, Fonseca GAB, Konstant WR, et al. (2003). Hotspots and the conservation of evolutionary history. Proc. Nat. Acad. Sci. 99: 2067-2071. http://dx.doi.org/10.1073/pnas.251680798 PMid:11854502 PMCid:122320   Siqueira MF and Peterson AT (2003). Consequences of global climate change for geographic distributions of cerrado tree species. Biota Neotrop. 3: 1-14.   Soares TN, Melo DB, Resende LV, Vianello RP, et al. (2012). Development of microsatellite markers for the Neotropical tree species Dipteryx alata (Fabaceae). Am. J. Bot. 99: e72-e73. http://dx.doi.org/10.3732/ajb.1100377 PMid:22282111   Thuiller W, Lavergne S, Roquet C, Boulangeat I, et al. (2011). Consequences of climate change on the tree of life in Europe. Nature 470: 531-534. http://dx.doi.org/10.1038/nature09705 PMid:21326204
2011
M. P. C. Telles, Peixoto, F. P., Lima, J. S., Resende, L. V., Vianello, R. P., Walter, M. E. M. T., and Collevatti, R. G., Development of microsatellite markers for the endangered Neotropical tree species Tibouchina papyrus (Melastomataceae), vol. 10, pp. 321-325, 2011.
Braga AC, Reis AMM, Leoi LT, Pereira RW, et al. (2007). Development and characterization of microsatellite markers for the tropical tree species Tabebuia aurea (Bignoniaceae). Mol. Ecol. Notes 7: 53-56. http://dx.doi.org/10.1111/j.1471-8286.2006.01521.x   Brandström M and Ellegren H (2008). Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias. Genome Res. 18: 881-887. http://dx.doi.org/10.1101/gr.075242.107 PMid:18356314 PMCid:2413155   Chakraborty R, Kimmel M, Stivers DN, Davison LJ, et al. (1997). Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci. Proc. Natl. Acad. Sci. U. S. A. 94: 1041-1046. http://dx.doi.org/10.1073/pnas.94.3.1041 PMid:9023379 PMCid:19636   Collevatti RG, Brondani RV and Grattapaglia D (1999). Development and characterization of microsatellite markers for genetic analysis of a Brazilian endangered tree species Caryocar brasiliense. Heredity 83 (Pt 6): 748-756. http://dx.doi.org/10.1046/j.1365-2540.1999.00638.x PMid:10651920   Collevatti RG, Lima JS, Soares TN and Telles MPC (2010). Spatial genetic structure and life history traits in Cerrado tree species: inferences for conservation. Nat. Conserv. 8: 54-59. http://dx.doi.org/10.4322/natcon.00801008   Creste S, Tulmann-Neto A and Figueira A (2001). Detection of single sequence repeat polymorphisms in denaturing polyacrylamide sequencing gels by silver staining. Plant Mol. Biol. Rep. 19: 299-306. http://dx.doi.org/10.1007/BF02772828   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Goudet J (2002). FSTAT 2.9.3.2.: A Program to Estimate and Test Gene Diversities and Fixation Indices. Available at [http://www.unil.ch/izea/softwares/fstat.html]. Accessed April 25, 2010.   Goudet J, Raymond M, Meeus T and Rousset F (1996). Testing differentiation in diploid populations. Genet. Res. 144: 1933-1940.   Martins WS, Lucas DC, Neves KF and Bertioli DJ (2009). WebSat - a web software for microsatellite marker development. Bioinformation 3: 282-283. http://dx.doi.org/10.6026/97320630003282 PMid:19255650 PMCid:2646864   Morgante M and Olivieri AM (1993). PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182. http://dx.doi.org/10.1111/j.1365-313X.1993.tb00020.x PMid:8401603   Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590. PMid:17248844 PMCid:1213855   Paetkau D, Calvert W, Stirling I and Strobeck C (1995). Microsatellite analysis of population structure in Canadian polar bears. Mol. Ecol. 4: 347-354. http://dx.doi.org/10.1111/j.1365-294X.1995.tb00227.x PMid:7663752   Reis AMM, Braga AC, Lemes MR, Gribel ROG, et al. (2009). Development and characterization of microsatellite markers for the Brazil nut tree Bertholletia excelsa Humb. & Bonpl. (Lecythidaceae). Mol. Ecol. Resour. 9: 920-923. http://dx.doi.org/10.1111/j.1755-0998.2008.02481.x PMid:21564791   Rozen S and Skaletsky HJ (2000). Primer3: Bioinformatics Methods and Protocols. In: Methods in Molecular Biology (Krawetz S and Misener S, eds.). Humana Press, Totowa, 365-386. Available at [http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi.]. Accessed February 8, 2010.   Sambrook J and Russell DW (2001). Molecular Cloning: a Laboratory Manual. 3rd edn. Cold Spring Harbor, New York.   Taramino G and Tingey S (1996). Simple sequence repeats for germplasm analysis and mapping in maize. Genome 39: 277-287. http://dx.doi.org/10.1139/g96-038 PMid:8984002   Wagner HW and Sefc KM (1999). Identity 1.0. Centre for Applied Genetics. University of Agricultural Sciences, Vienna. Available at [http://www.boku.ac.at/zag/forsch/identity.htm]. Accessed April 25, 2010.   Weber JL (1990). Informativeness of human (dC-dA)n.(dG-dT)n polymorphisms. Genomics 7: 524-530. http://dx.doi.org/10.1016/0888-7543(90)90195-Z   Weir BS (1996). Genetic Data Analysis II - Methods for Discrete Population Genetic Data. Sinauer Associates Inc., Sunderland.   Weir BS and Cockerham C (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358- 1370. http://dx.doi.org/10.2307/2408641