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2012
I. Ullah, Jamil, S., Iqbal, M. Z., Shaheen, H. L., Hasni, S. M., Jabeen, S., Mehmood, A., and Akhter, M., Detection of bacterial blight resistance genes in basmati rice landraces, vol. 11, pp. 1960-1966, 2012.
Arif M, Jaffar M, Babar M, Sheikh AM, et al. (2008). Identification of bacterial blight resistance genes Xa4 in Pakistani rice germplasm using PCR. Afr. J. Biotechnol. 7: 541-545.   Blair MW and McCouch SR (1997). Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5. Theor. Appl. Genet. 95: 174-184. http://dx.doi.org/10.1007/s001220050545   Brush SB (2000). The Issues of in Situ Conservation of Crop Genetic Resources. In: Genes in the Field: On-Farm Conservation of Crop Diversity (Brush SB, ed.). IPGRI, IDRC. Lewis Publishers, Chelsea, 3-26.   Chen S, Huang Z, Zeng L, Yang J, et al. (2008). High-resolution mapping and gene prediction of Xanthomonas oryzae pv. oryzae resistance gene Xa7. Mol. Breed. 22: 433-441. http://dx.doi.org/10.1007/s11032-008-9187-1   Chen S, Liu X, Zeng L, Ouyang D, et al. (2011). Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae. Theor. Appl. Genet. 122: 1331-1338. http://dx.doi.org/10.1007/s00122-011-1534-7 PMid:21274511   Chen X, Temnykh S, Xu Y, Cho YG, et al. (1997). Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor. Appl. Genet. 95: 553-567. http://dx.doi.org/10.1007/s001220050596   Iyer AS and McCouch SR (2004). The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance. Mol. Plant Microbe Interact. 17: 1348-1354. http://dx.doi.org/10.1094/MPMI.2004.17.12.1348 PMid:15597740   Khush GS (2005). What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol. Biol. 59: 1-6. http://dx.doi.org/10.1007/s11103-005-2159-5 PMid:16217597   Ma BJ, Wang WM, Zhao B, Zhou YL, et al. (1999). Studies of PCR marker for the rice bacterial blight resistance gene Xa-4. Hereditas 21: 9-12.   Perumalsamy S, Bharani M, Sudha M, Nagarajan P, et al. (2010). Functional marker-assisted selection for bacterial leaf blight resistance genes in rice (Oryza sativa L.). Plant Breed. 129: 400-406.   Petpisit V, Khush GS and Kauffman HE (1977). Inheritance of resistance to bacterial blight in rice. Crop Sci. 17: 551-554. http://dx.doi.org/10.2135/cropsci1977.0011183X001700040018x   Porter BW, Chittoor JM, Yano M, Sasaki T, et al. (2003). Development and mapping of markers linked to the rice bacterial blight resistance gene Xa7. Crop Sci. 43: 1484-1492. http://dx.doi.org/10.2135/cropsci2003.1484   Rajpurohit D, Kumar R, Kumar M, Paul P, et al. (2010). Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection. Euphytica 178: 111-126. http://dx.doi.org/10.1007/s10681-010-0279-8   Sidhu GS, Khush GS and Mew TW (1978). Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L. Theor. Appl. Genet. 53: 105-111. http://dx.doi.org/10.1007/BF00272687   Srinivasan B and Gnanamanickam S (2005). Identification of a new source of resistance in wild rice, Oryza rufipogon to bacterial blight of rice caused by Indian strains of Xanthomonas oryzae pv. oryzae. Curr. Sci. 88: 1229-1231.   Sukhwinder-Singh, Sodhi M, Vikal Y, George MLC, et al. (2003). DNA fingerprinting and virulence analysis of Xanthomonas oryzae pv. oryzae isolates from Punjab, northern India. Euphytica 130: 107-115. http://dx.doi.org/10.1023/A:1022329024651   Yoshimura S, Yoshimura A, Iwata N, McCouch SR, et al. (1995). Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers. Mol. Breed. 1: 375-387. http://dx.doi.org/10.1007/BF01248415   Zhang G, Angeles ER, Abenes MLP, Khush GS, et al. (1996). RAPD and RFLP mapping of the bacterial blight resistance gene Xa-13 in rice. Theor. Appl. Genet. 93: 65-70. http://dx.doi.org/10.1007/BF00225728
I. Ullah, Iram, A., Iqbal, M. Z., Nawaz, M., Hasni, S. M., and Jamil, S., Genetic diversity analysis of Bt cotton genotypes in Pakistan using simple sequence repeat markers, vol. 11, pp. 597-605, 2012.
Bertini CHCM, Schuster I, Sediyama T, Barros EG, et al. (2006). Characterization and genetic diversity analysis of cotton cultivars using microsatellites. Genet. Mol. Biol. 29: 321-329. http://dx.doi.org/10.1590/S1415-47572006000200021 Bowman DT (2000). Attributes of public and private cotton breeding programs. J. Cotton Sci. 4: 130-136. Dongre A and Parkhi V (2005). Identification of cotton hybrid through the combination of PCR based RAPD, ISSR and microsatellite markers. J. Plant Biochem. Biot. 14: 53-55. Fitt GP, Mares CL and Llewellyn DJ (1994). Field evaluation and potential ecological impact of transgenic cottons (Gossypium hirsutum) in Australia. Biocontrol. Sci. Tech. 4: 535-548. http://dx.doi.org/10.1080/09583159409355367 GOP (2010). Economic Survey of Pakistan: Finance Division. Government of Pakistan, Pakistan. Gutiérrez OA, Basu S, Saha S, Jenkins JN, et al. (2002). Genetic distance among selected cotton genotypes and its relationship with F2 performance. Crop Sci. 42: 1841-1847. http://dx.doi.org/10.2135/cropsci2002.1841 Halcomb JL, Benedict JB, Cook B and Ring DR (1996). Survival and growth of bollworm and tobacco budworm on nontransgenic and transgenic cotton expressing a CryIA insecticidal protein (Lepidoptera: Noctuidae). Environ. Entomol. 25: 250-255. Iqbal MJ, Aziz N, Saeed NA, Zafar Y, et al. (1997). Genetic diversity evaluation of some elite cotton varieties by RAPD analysis. Theor. Appl. Genet. 94: 139-144. http://dx.doi.org/10.1007/s001220050392 PMid:19352756 Iqbal MJ, Reddy OUK, El-Zak KM and Pepper AE (2001). A genetic bottleneck in the “evolution under domestication” of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor. Appl. Genet. 103: 547-554. http://dx.doi.org/10.1007/PL00002908 James C (2010). Global Status of Commercialized Biotech/GM Crops. 2010 ISAAA Brief No. 42. ISAAA, Ithaca. Khan AI, Fu YB and Khan IA (2009). Genetic diversity of Pakistani cotton cultivars as revealed by simple sequence repeat markers. CBCS 4: 21-30. Lacape JM, Dessauw D, Rajab M, Noyer JL, et al. (2007). Microsatellite diversity in tetraploid Gossypium germplasm: Assembling a highly informative genotyping set of cotton SSRs. Mol. Breed. 19: 45-58. http://dx.doi.org/10.1007/s11032-006-9042-1 Lu J and Myers O (2002). Genetic relationships and discrimination of ten influential upland cotton varieties using RAPD markers. Theor. Appl. Genet. 105: 325-331. http://dx.doi.org/10.1007/s00122-002-0947-8 PMid:12582535 Multani DS and Lyon BR (1995). Genetic fingerprinting of Australian cotton cultivars with RAPD markers. Genome 38: 1005-1008. http://dx.doi.org/10.1139/g95-132 PMid:18470223 Nei M (1972). Genetic distance between populations. Am. Nat. 106: 283-292. http://dx.doi.org/10.1086/282771 Perlak FJ, Deaton RW, Armstrong TA, Fuchs RL, et al. (1990). Insect resistant cotton plants. Biotechnology 8: 939-943. http://dx.doi.org/10.1038/nbt1090-939 PMid:1366777 Rahman M, Hussain D and Zafar Y (2002). Estimation of genetic divergence among elite cotton cultivars-genotypes by DNA fingerprinting technology. Crop Sci. 42: 2137-2144. http://dx.doi.org/10.2135/cropsci2002.2137 Rahman M, Yasmin T, Tabassum N, Ullah I, et al. (2008). Studying the extent of genetic diversity among Gossypium arboreum L. genotypes/cultivars using DNA fingerprinting. Genet. Resour. Crop Evol. 55: 331-339. http://dx.doi.org/10.1007/s10722-007-9238-1 Tabashnik BE, Gassmann AJ, Crowder DW and Carriere Y (2008). Insect resistance to Bt crops: evidence versus theory. Nat. Biotechnol. 26: 199-202. http://dx.doi.org/10.1038/nbt1382 PMid:18259177 Trolinder NL and Xhixian C (1989). Genotype specificity of the somatic embryogenesis response in cotton. Plant Cell Rep. 8: 133-136. http://dx.doi.org/10.1007/BF00716824 Van Esbroeck GA, Bowman DT, Calhoun DS and May OL (1998). Changes in the genetic diversity of cotton in the USA from 1970 to 1995. Crop Sci. 38: 33-37. http://dx.doi.org/10.2135/cropsci1998.0011183X003800010006x Wang X, Ma J, Yang S, Zhang G, et al. (2007). Assessment of genetic diversity among Chinese Upland cottons with Fusarium and/or Verticillium wilts resistance by AFLP and SSR markers. Front Agric. China. 1: 129-135. http://dx.doi.org/10.1007/s11703-007-0023-x Zhang J, Lu Y, Cantrell RG and Hughs E (2005). Molecular marker diversity and field performance in commercial cotton cultivars evaluated in the southwestern USA. Crop Sci. 45: 1483-1490. http://dx.doi.org/10.2135/cropsci2004.0581
2010
S. Tabasum, Khan, F. A., Nawaz, S., Iqbal, M. Z., and Saeed, A., DNA profiling of sugarcane genotypes using randomly amplified polymorphic DNA, vol. 9, pp. 471-483, 2010.
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Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590. PMid:17248844 PMCid:1213855   Pan YB, Miller J, Schnell R, Richard E, et al. (2003). Application of Microsatellite and RAPD Fingerprints in the Florida Sugarcane Variety Program. In: Plant Animal Genome VX Conference, Houma, Abstract 43.   Pan YB, Burner DM, Legendre BL, Grisham MP, et al. (2005). An assessment of the genetic diversity within a collection of Saccharum spontaneum L. with RAPD-PCR. Genet. Res. Crop Evol. 51: 895-903. http://dx.doi.org/10.1007/s10722-005-1933-1   Pillay M and Kenny ST (1995). Anomalies in direct pair-wise comparisons of RAPD fragments for genetic analysis. Biotechniques 19: 694-6, 698. PMid:8588897   Reeves J, Law J, Donin P, Koebner MR, et al. (1999). Changes over time in the genetic diversity of UK cereal crops. 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Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species. Theor. Appl. Genet. 88: 973-980. http://dx.doi.org/10.1007/BF00220804   Weir BS (1990). Genetic Data Analysis: Methods for Discrete Population Genetic Data. Sinauer Associates Inc., Sunderland.   Wolfe AD and Liston A (1998). Contribution of PCR-based Methods to Plant Systematics and Evolutionary Biology. In: Molecular Systematics of Plants II: DNA Sequencing (Soltis DE, Soltis PS and Doyle JJ, eds.). Kluwer, Boston, 43-86. http://dx.doi.org/10.1007/978-1-4615-5419-6_2   Yang X and Quiros C (1993). Identification and classification of celery cultivars with RAPD markers. Theor. Appl. Genet. 86: 205-212. http://dx.doi.org/10.1007/BF00222080
S. Nawaz, Khan, F. A., Tabasum, S., Iqbal, M. Z., and Saeed, A., Genetic studies of “noble cane” for identification and exploitation of genetic markers, vol. 9, pp. 1011-1022, 2010.
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S. Nawaz, Khan, F. A., Tabasum, S., Zakria, M., Saeed, A., and Iqbal, M. Z., Phylogenetic relationships among Saccharum clones in Pakistan revealed by RAPD markers, vol. 9, pp. 1673-1682, 2010.
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