Publications
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“ Prevalence and genotype distribution of human papillomavirus in women in the Henan Province”, vol. 14, pp. 5452-5461, 2015.
, “Phylogeny of major lineages of galliform birds (Aves: Galliformes) based on complete mitochondrial genomes”, vol. 9, pp. 1625-1633, 2010.
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http://dx.doi.org/10.1093/bioinformatics/bti263
PMid:15647292
Birks SM and Edwards SV (2002). A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 23: 408-421.
http://dx.doi.org/10.1016/S1055-7903(02)00002-7
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http://dx.doi.org/10.1080/00359198809520135
Crowe TM, Bowie RCK, Bloomer P, Mandiwana TG, et al. (2006). Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data. Cladistics 22: 495-532.
http://dx.doi.org/10.1111/j.1096-0031.2006.00120.x
Cummings MP, Otto SP and Wakeley J (1995). Sampling properties of DNA sequence data in phylogenetic analysis. Mol. Biol. Evol. 12: 814-822.
PMid:7476127
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Dimcheff DE, Drovetski SV and Mindell DP (2002). Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Mol. Phylogenet. Evol. 24: 203-215.
http://dx.doi.org/10.1016/S1055-7903(02)00230-0
Dyke GJ, Gulas BE and Crowe TM (2003). Suprageneric relationships of galliform birds (Aves, Galliformes): a cladistic analysis of morphological characters. Zool. J. Linn. Soc. 137: 227-244.
http://dx.doi.org/10.1046/j.1096-3642.2003.00048.x
Felsenstein J (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
http://dx.doi.org/10.2307/2408678
Guan X, Silva P, Gyenai KB, Xu J, et al. (2009). The mitochondrial genome sequence and molecular phylogeny of the turkey, Meleagris gallopavo. Anim. Genet. 40: 134-141.
http://dx.doi.org/10.1111/j.1365-2052.2008.01810.x
PMid:19067672 PMCid:2664387
Guindon S and Gascuel O (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52: 696-704.
http://dx.doi.org/10.1080/10635150390235520
PMid:14530136
He L, Dai B, Zeng B, Zhang X, et al. (2009). The complete mitochondrial genome of the Sichuan Hill Partridge (Arborophila rufipectus) and a phylogenetic analysis with related species. Gene 435: 23-28.
http://dx.doi.org/10.1016/j.gene.2009.01.001
PMid:19393190
Hockey PAR, Dean WRJ and Ryan PG (2005). Roberts-Birds of Southern Africa. 5th edn. The Trustees of the John Voclcker Bird Book Fund, Cape Town.
Huelsenbeck JP and Ronquist F (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
http://dx.doi.org/10.1093/bioinformatics/17.8.754
PMid:11524383
Kan XZ, Li XF, Lei ZP, Wang M, et al. (2010). Complete mitochondrial genome of Cabot's tragopan, Tragopan caboti (Galliformes: Phasianidae). Genet. Mol. Res. 9: 1204-1216.
http://dx.doi.org/10.4238/vol9-2gmr820
PMid:20589618
Kimball RT, Braun EL, Zwartjes PW, Crowe TM, et al. (1999). A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Mol. Phylogenet. Evol. 11: 38-54.
http://dx.doi.org/10.1006/mpev.1998.0562
PMid:10082609
Larkin MA, Blackshields G, Brown NP, Chenna R, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
http://dx.doi.org/10.1093/bioinformatics/btm404
PMid:17846036
Livezey BC and Zusi RL (2007). Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion. Zool. J. Linn. Soc. 149: 1-95.
http://dx.doi.org/10.1111/j.1096-3642.2006.00293.x
PMid:18784798 PMCid:2517308
Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y, et al. (2001). Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Anim. Genet. 32: 380-385.
http://dx.doi.org/10.1046/j.1365-2052.2001.00795.x
PMid:11736810
Nishibori M, Tsudzuki M, Hayashi T, Yamamoto Y, et al. (2002). Complete nucleotide sequence of the Coturnix chinensis (blue-breasted quail) mitochondrial genome and a phylogenetic analysis with related species. J. Hered. 93: 439-444.
http://dx.doi.org/10.1093/jhered/93.6.439
PMid:12642645
Nishibori M, Hayashi T and Yasue H (2004). Complete nucleotide sequence of Numida meleagris (Helmeted guineafowl) mitochondrial genome. J. Poult. Sci. 41: 259-268.
http://dx.doi.org/10.2141/jpsa.41.259
Nishibori M, Shimogiri T, Hayashi T and Yasue H (2005). Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius. Anim. Genet. 36: 367-375.
http://dx.doi.org/10.1111/j.1365-2052.2005.01318.x
PMid:16167978
Pereira SL and Baker AJ (2009). Waterfowl and Gamefowl (Galloanserae). In: The Timetree of Life (Hedges SB and Kumar S, eds.). Oxford University Press, New York, 415-418.
PMCid:2719981
Peters JL (1934). Checklist of the Birds of the World. Vol. 2. Harvard University Press, Cambridge.
Posada D (2008). jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25: 1253-1256.
http://dx.doi.org/10.1093/molbev/msn083
PMid:18397919
Rich PV and van Tets GF (1985). Kadimakara: Extinct Vertebrates of Australia. Pioneer Design Studio, Lilydale.
Shen YY, Shi P, Sun YB and Zhang YP (2009). Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability. Genome Res. 19: 1760-1765.
http://dx.doi.org/10.1101/gr.093138.109
PMid:19617397 PMCid:2765268
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http://dx.doi.org/10.1016/j.ympev.2006.06.002
PMid:16854605
Swofford D (2002). PAUP*. Phylogenetic analysis using parsimony (and other methods). Version 4. Sinauer Associates, Inc., Sunderland.
PMid:12504223
Talavera G and Castresana J (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 56: 564-577.
http://dx.doi.org/10.1080/10635150701472164
PMid:17654362
Van Tuinen M and Dyke GJ (2004). Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Mol. Phylogenet. Evol. 30: 74-86.
http://dx.doi.org/10.1016/S1055-7903(03)00164-7
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http://dx.doi.org/10.1016/S0074-7696(08)62066-5
Xia X and Xie Z (2001). DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92: 371-373.
http://dx.doi.org/10.1093/jhered/92.4.371
PMid:11535656
Xia X, Xie Z, Salemi M, Chen L, et al. (2003). An index of substitution saturation and its application. Mol. Phylogenet. Evol. 26: 1-7.
http://dx.doi.org/10.1016/S1055-7903(02)00326-3