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2010
E. C. Jorge, Melo, C. M. R., Rosário, M. F., Rossi, J. R. S., Ledur, M. C., Moura, A. S. A. M. T., and Coutinho, L. L., Chicken skeletal muscle-associated macroarray for gene discovery, vol. 9, pp. 188-207, 2010.
Adams MD, Kelley JM, Gocayne JD, Dubnick M, et al. (1991). Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 1651-1656. http://dx.doi.org/10.1126/science.2047873 PMid:2047873   Afrakhte M and Schultheiss TM (2004). Construction and analysis of a subtracted library and microarray of cDNAs expressed specifically in chicken heart progenitor cells. Dev. Dyn. 230: 290-298. http://dx.doi.org/10.1002/dvdy.20059   Baldessari D, Shin Y, Krebs O, König R, et al. (2005). Global gene expression profiling and cluster analysis in Xenopus laevis. Mech. Dev. 122: 441-475. http://dx.doi.org/10.1016/j.mod.2004.11.007   Bliss TW, Dohms JE, Emara MG and Keeler CL Jr (2005). Gene expression profiling of avian macrophage activation. Vet. Immunol. Immunopathol. 105: 289-299. http://dx.doi.org/10.1016/j.vetimm.2005.02.013 PMid:15808307   Bono H, Yagi K, Kasukawa T, Nikaido I, et al. (2003). Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays. Genome Res. 13: 1318-1323. http://dx.doi.org/10.1101/gr.1075103 PMid:12819129 PMCid:403653   Buza TJ, McCarthy FM and Burgess SC (2007). Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome. BMC Genomics 8: 425. http://dx.doi.org/10.1186/1471-2164-8-425 PMid:18021451 PMCid:2204016   Cogburn LA, Porter TE, Duclos MJ, Simon J, et al. (2007). Functional genomics of the chicken - a model organism. Poult. Sci. 86: 2059-2094. PMid:17878436   Eisen MB, Spellman PT, Brown PO and Botstein D (1998). Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95: 14863-14868. http://dx.doi.org/10.1073/pnas.95.25.14863 PMCid:24541   Fukata Y, Iwanaga T and Fukata M (2006). Systematic screening for palmitoyl transferase activity of the DHHC protein family in mammalian cells. Methods 40: 177-182. http://dx.doi.org/10.1016/j.ymeth.2006.05.015   Galperin MY and Koonin EV (2004). 'Conserved hypothetical' proteins: prioritization of targets for experimental study. Nucleic Acids Res. 32: 5452-5463. http://dx.doi.org/10.1093/nar/gkh885 PMid:15479782 PMCid:524295   Gollery M, Harper J, Cushman J, Mittler T, et al. (2006). What makes species unique? The contribution of proteins with obscure features. Genome Biol. 7: R57. http://dx.doi.org/10.1186/gb-2006-7-7-r57 PMid:16859532   Gollery M, Harper J, Cushman J, Mittler T, et al. (2007). POFs: what we don't know can hurt us. Trends Plant Sci. 12: 492-496. http://dx.doi.org/10.1016/j.tplants.2007.08.018 PMid:17928258   Graveley BR (2001). Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17: 100-107. http://dx.doi.org/10.1016/S0168-9525(00)02176-4   Hamburger V and Hamilton HL (1951). A series of normal stages in the development of the chick embryo. J. Morphol. 88: 49-92. http://dx.doi.org/10.1002/jmor.1050880104   Hata K, Fujitani M, Yasuda Y, Doya H, et al. (2006). RGMa inhibition promotes axonal growth and recovery after spinal cord injury. J. Cell Biol. 173: 47-58. http://dx.doi.org/10.1083/jcb.200508143 PMid:16585268   Hillier LW, Miller W, Birney E and Warren W, et al. (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716. http://dx.doi.org/10.1038/nature03154 PMid:15592404   Huang X and Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877. http://dx.doi.org/10.1101/gr.9.9.868 PMid:10508846   Jorge EC, Monteiro-Vitorelo CB, Alves HJ and Silva CS, et al. (2004). EST analysis of mRNA expressed during embryogenesis in Gallus gallus. Int. J. Dev. Biol. 48: 333-337. http://dx.doi.org/10.1387/ijdb.031775ej PMid:15300514   Jorge EC, Figueira A, Ledur MC and Moura ASAMT, et al. (2007). Contributions and perspectives of chicken genomics in Brazil: from biological model to export commodity. Worlds Poult. Sci. J. 63: 597-610. http://dx.doi.org/10.1017/S004393390700164X   Kuninger D, Kuzmickas R, Peng B, Pintar JE, et al. (2004). Gene discovery by microarray: identification of novel genes induced during growth factor-mediated muscle cell survival and differentiation. Genomics 84: 876-889. http://dx.doi.org/10.1016/j.ygeno.2004.07.013 PMid:15475267   Kusano S and Raab-Traub N (2002). I-mfa domain proteins interact with Axin and affect its regulation of the Wnt and c-Jun N-terminal kinase signaling pathways. Mol. Cell Biol. 22: 6393-6405. http://dx.doi.org/10.1128/MCB.22.18.6393-6405.2002 PMid:12192039   Matsunaga E and Chédotal A (2004). Repulsive guidance molecule/neogenin: a novel ligand-receptor system playing multiple roles in neural development. Dev. Growth Differ. 46: 481-486. http://dx.doi.org/10.1111/j.1440-169x.2004.00768.x PMid:15610137   Mawdsley DJ, Cooper HM, Hogan BM, Cody SH, et al. (2004). The Netrin receptor Neogenin is required for neural tube formation and somitogenesis in zebrafish. Dev. Biol. 269: 302-315. http://dx.doi.org/10.1016/j.ydbio.2004.02.001 PMid:15081375   Monnier PP, Sierra A, Macchi P, Deitinghoff L, et al. (2002). RGM is a repulsive guidance molecule for retinal axons. Nature 419: 392-395. http://dx.doi.org/10.1038/nature01041   Nagaya M, Inohaya K, Imai Y and Kudo A (2002). Expression of zisp, a DHHC zinc finger gene, in somites and lens during zebrafish embryogenesis. Mech. Dev. 119 (Suppl 1): S311-S314. http://dx.doi.org/10.1016/S0925-4773(03)00133-3   Neiman PE, Ruddell A, Jasoni C, Loring G, et al. (2001). Analysis of gene expression during myc oncogene-induced lymphomagenesis in the bursa of Fabricius. Proc. Natl. Acad. Sci. USA 98: 6378-6383. http://dx.doi.org/10.1073/pnas.111144898 PMid:11353853   Niederkofler V, Salie R, Sigrist M and Arber S (2004). Repulsive guidance molecule (RGM) gene function is required for neural tube closure but not retinal topography in the mouse visual system. J. Neurosci. 24: 808-818. http://dx.doi.org/10.1523/JNEUROSCI.4610-03.2004 PMid:14749425   Niehrs C and Pollet N (1999). Synexpression groups in eukaryotes. Nature 402: 483-487. http://dx.doi.org/10.1038/990025 PMid:10591207   Papanikolaou G, Samuels ME, Ludwig EH, MacDonald ML, et al. (2004). Mutations in HFE2 cause iron overload in chromosome 1q-linked juvenile hemochromatosis. Nat. Genet. 36: 77-82. http://dx.doi.org/10.1038/ng1274 PMid:14647275   Postigo AA and Dean DC (1999). Independent repressor domains in ZEB regulate muscle and T-cell differentiation. Mol. Cell Biol. 19: 7961-7971.   Ross M, Labrie T, McPherson S and Stanton VP (1999). Screening large-insert libraries by hybridization. Curr. Protoc. Hum. Genet. 5.6.1-5.6.32. DOI: 10.1002/0471142905.hg0506s21. http://dx.doi.org/10.1002/0471142905.hg0506s21   Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning: a Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, Plainview.   Scott SV, Nice DC III, Nau JJ, Weisman LS, et al. (2000). Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting. J. Biol. Chem. 275: 25840-25849. http://dx.doi.org/10.1074/jbc.M002813200   Smith J, Speed D, Hocking PM, Talbot RT, et al. (2006). Development of a chicken 5K microarray targeted towards immune function. BMC Genomics 7: 49. http://dx.doi.org/10.1186/1471-2164-7-49   Soares MB, Bonaldo MF, Jelene P, Su L, et al. (1994). Construction and characterization of a normalized cDNA library. Proc. Natl. Acad. Sci. USA 91: 9228-9232. http://dx.doi.org/10.1073/pnas.91.20.9228   Szustakowski JD, Lee JH, Marrese CA, Kosinski PA, et al. (2006). Identification of novel pathway regulation during myogenic differentiation. Genomics 87: 129-138. http://dx.doi.org/10.1016/j.ygeno.2005.08.009   van Hemert S, Ebbelaar BH, Smits MA and Rebel JM (2003). Generation of EST and microarray resources for functional genomic studies on chicken intestinal health. Anim. Biotechnol. 14: 133-143. http://dx.doi.org/10.1081/ABIO-120026483   Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, et al. (2001). Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8: 625-637. http://dx.doi.org/10.1089/106652701753307520   Woods S, Farrall A, Procko C and Whitelaw ML (2008). The bHLH/Per-Arnt-Sim transcription factor SIM2 regulates muscle transcript myomesin2 via a novel, non-canonical E-box sequence. Nucleic Acids Res. 36: 3716-3727. http://dx.doi.org/10.1093/nar/gkn247   Zhang W, Morris QD, Chang R, Shai O, et al. (2004). The functional landscape of mouse gene expression. J. Biol. 3: 21. http://dx.doi.org/10.1186/jbiol16