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Found 11 results
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2013
J. F. Wen, Huo, J. L., Chen, H. X., Ma, C. H., Jiang, H., Zhu, H. S., Zhou, H., and Deng, M. H., Cloning and bioinformatic analysis of full-length novel pepper (Capsicum annuum) genes TAF10 and TAF13, vol. 12, pp. 6947-6956, 2013.
S. Y. Wang, Huo, J. L., Miao, Y. W., Cheng, W. M., and Zeng, Y. Z., Complementary DNA cloning, sequence analysis, and tissue transcription profile of a novel U2AF2 gene from the Chinese Banna mini-pig inbred line, vol. 12, pp. 925-934, 2013.
Bartel DP (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297. http://dx.doi.org/10.1016/S0092-8674(04)00045-5   Crabbe JC, Metten P, Cameron AJ and Wahlsten D (2005). An analysis of the genetics of alcohol intoxication in inbred mice. Neurosci. Biobehav. Rev. 28: 785-802. http://dx.doi.org/10.1016/j.neubiorev.2004.08.002 PMid:15642621   Das R, Yu J, Zhang Z, Gygi MP, et al. (2007). SR proteins function in coupling RNAP II transcription to pre-mRNA splicing. Mol. Cell 26: 867-881. http://dx.doi.org/10.1016/j.molcel.2007.05.036 PMid:17588520   Fleckner J, Zhang M, Valcarcel J and Green MR (1997). U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction. Genes Dev. 11: 1864-1872. http://dx.doi.org/10.1101/gad.11.14.1864 PMid:9242493   Kielkopf CL, Rodionova NA, Green MR and Burley SK (2001). A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell 106: 595-605. http://dx.doi.org/10.1016/S0092-8674(01)00480-9   Lin S and Fu XD (2007). SR proteins and related factors in alternative splicing. Adv. Exp. Med. Biol. 623: 107-122. http://dx.doi.org/10.1007/978-0-387-77374-2_7 PMid:18380343   Mazza C, Ohno M, Segref A, Mattaj IW, et al. (2001). Crystal structure of the human nuclear cap binding complex. Mol. Cell 8: 383-396. http://dx.doi.org/10.1016/S1097-2765(01)00299-4   Merendino L, Guth S, Bilbao D, Martinez C, et al. (1999). Inhibition of msl-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3' splice site AG. Nature 402: 838-841. http://dx.doi.org/10.1038/45602 PMid:10617208   Moller S, Croning MD and Apweiler R (2001). Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17: 646-653. http://dx.doi.org/10.1093/bioinformatics/17.7.646 PMid:11448883   Price SR, Evans PR and Nagai K (1998). Crystal structure of the spliceosomal U2B"-U2A' protein complex bound to a fragment of U2 small nuclear RNA. Nature 394: 645-650. http://dx.doi.org/10.1038/29234 PMid:9716128   Shen H and Green MR (2004). A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly. Mol. Cell 16: 363-373. http://dx.doi.org/10.1016/j.molcel.2004.10.021 PMid:15525510   Valcarcel J, Gaur RK, Singh R and Green MR (1996). Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected]. Science 273: 1706-1709. http://dx.doi.org/10.1126/science.273.5282.1706 PMid:8781232   Wu S, Romfo CM, Nilsen TW and Green MR (1999). Functional recognition of the 3' splice site AG by the splicing factor U2AF35. Nature 402: 832-835. http://dx.doi.org/10.1038/45996 PMid:10617206   Yu P, Zhang L, Li S, Li Y, et al. (2004). Screening and analysis of porcine endogenous retrovirus in Chinese Banna minipig inbred line. Transplant Proc. 36: 2485-2487. http://dx.doi.org/10.1016/j.transproceed.2004.07.055 PMid:15561290   Zamore PD, Patton JG and Green MR (1992). Cloning and domain structure of the mammalian splicing factor U2AF. Nature 355: 609-614. http://dx.doi.org/10.1038/355609a0 PMid:1538748   Zeng R and Zeng YZ (2005). Molecular cloning and characterization of SLA-DR genes in the 133-family of the Banna mini-pig inbred line. Anim. Genet. 36: 267-269. http://dx.doi.org/10.1111/j.1365-2052.2005.01277.x PMid:15932417   Zeng Y, Yi R and Cullen BR (2003). MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms. Proc. Natl. Acad. Sci. U. S. A. 100: 9779-9784. http://dx.doi.org/10.1073/pnas.1630797100 PMid:12902540 PMCid:187842   Zorio DA and Blumenthal T (1999). Both subunits of U2AF recognize the 3' splice site in Caenorhabditis elegans. Nature 402: 835-838. http://dx.doi.org/10.1038/45597 PMid:10617207
M. H. Deng, Huo, J. L., Zhu, H. S., Zhou, H., and Wen, J. F., Molecular cloning and tissue expression analyses of two novel pepper genes: heterotrimeric G protein beta 2 subunit and ArcA1, vol. 12, pp. 1223-1231, 2013.
Arnold K, Bordoli L, Kopp J and Schwede T (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201. http://dx.doi.org/10.1093/bioinformatics/bti770 PMid:16301204   Bassi MT, Ramesar RS, Caciotti B, Winship IM, et al. (1999). X-linked late-onset sensorineural deafness caused by a deletion involving OA1 and a novel gene containing WD-40 repeats. Am. J. Hum. Genet. 64: 1604-1616. http://dx.doi.org/10.1086/302408 PMid:10330347 PMCid:1377903   Bendtsen JD, Nielsen H, von Heijne G and Brunak S (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340: 783-795. http://dx.doi.org/10.1016/j.jmb.2004.05.028 PMid:15223320   Deng M-H, Wen J-F, Huo J-L, Zhu H-S, et al. (2011). Relationship of metabolism of reactive oxygen species with cytoplasmic male sterility in pepper (Capsicum annuum L.). Sci. Hortic. 134: 232-236. http://dx.doi.org/10.1016/j.scienta.2011.10.027   Deng W, Tan Y, Wang X, Xi D, et al. (2009). Molecular cloning, sequence characteristics, and polymorphism analyses of the tyrosinase-related protein 2 / DOPAchrome tautomerase gene of black-boned sheep (Ovis aries). Genome 52: 1001-1011. http://dx.doi.org/10.1139/G09-078 PMid:19953128   Fong HK, Hurley JB, Hopkins RS, Miake-Lye R, et al. (1986). Repetitive segmental structure of the transducin beta subunit: homology with the CDC4 gene and identification of related mRNAs. Proc. Natl. Acad. Sci. U. S. A. 83: 2162-2166. http://dx.doi.org/10.1073/pnas.83.7.2162 PMid:3083416 PMCid:323251   Guex N and Peitsch MC (1997). SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18: 2714-2723. http://dx.doi.org/10.1002/elps.1150181505 PMid:9504803   Hunziker AT (2001). Genera Solanacearum: The Genera of Solanaceae Illustrated, Arranged According to a New System. Gantner Verlag, Ruggell, Liechtenstein. 516.   Hurowitz EH, Melnyk JM, Chen YJ, Kouros-Mehr H, et al. (2000). Genomic characterization of the human heterotrimeric G protein alpha, beta, and gamma subunit genes. DNA Res. 7: 111-120. http://dx.doi.org/10.1093/dnares/7.2.111 PMid:10819326   Ishida S, Takahashi Y and Nagata T (1993). Isolation of cDNA of an auxin-regulated gene encoding a G protein beta subunit-like protein from tobacco BY-2 cells. Proc. Natl. Acad. Sci. U. S. A. 90: 11152-11156. http://dx.doi.org/10.1073/pnas.90.23.11152 PMid:8248221 PMCid:47940   Ishida S, Takahashi Y and Nagata T (1996). The mode of expression and promoter analysis of the arcA gene, an auxin-regulated gene in tobacco BY-2 cells. Plant Cell Physiol. 37: 439-448. http://dx.doi.org/10.1093/oxfordjournals.pcp.a028965 PMid:8759913   Kiyosue T and Ryan CA (1999). Molecular cloning of two cDNAs encoding G-protein beta-subunit-like proteins from tomato (Accession Nos. AB022686 and AB022687). Plant Physiol. 119: 1567.   Knapp S (2002). Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae. J. Exp. Bot. 53: 2001-2022. http://dx.doi.org/10.1093/jxb/erf068 PMid:12324525   Kwon O, Georgellis D and Lin EC (2000). Phosphorelay as the sole physiological route of signal transmission by the arc two-component system of Escherichia coli. J. Bacteriol. 182: 3858-3862. http://dx.doi.org/10.1128/JB.182.13.3858-3862.2000 PMid:10851007 PMCid:94563   Letunic I, Doerks T and Bork P (2012). SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res. 40: D302-D305. http://dx.doi.org/10.1093/nar/gkr931 PMid:22053084 PMCid:3245027   Liliental J and Chang DD (1998). Rack1, a receptor for activated protein kinase C, interacts with integrin beta subunit. J. Biol. Chem. 273: 2379-2383. http://dx.doi.org/10.1074/jbc.273.4.2379 PMid:9442085   Lynch AS and Lin ECC (1996). Responses to Molecular Oxygen. ASM Press, Washington.   Nakai K and Horton P (1999). PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24: 34-36. http://dx.doi.org/10.1016/S0968-0004(98)01336-X   Neer EJ, Schmidt CJ, Nambudripad R and Smith TF (1994). The ancient regulatory-protein family of WD-repeat proteins. Nature 371: 297-300. http://dx.doi.org/10.1038/371297a0 PMid:8090199   Reece J and Campbell N (2002). Biology. Benjamin Cummings, San Francisco.   Schultz J, Milpetz F, Bork P and Ponting CP (1998). SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl. Acad. Sci. U. S. A. 95: 5857-5864. http://dx.doi.org/10.1073/pnas.95.11.5857 PMid:9600884 PMCid:34487   Schwede T, Kopp J, Guex N and Peitsch MC (2003). SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res. 31: 3381-3385. http://dx.doi.org/10.1093/nar/gkg520 PMid:12824332 PMCid:168927   Yu H, Chen S, Xi D, He Y, et al. (2010). Molecular cloning, sequence characterization and tissue transcription profile analyses of two novel genes: LCK and CDK2 from the Black-boned sheep (Ovis aries). Mol. Biol. Rep. 37: 39-45. http://dx.doi.org/10.1007/s11033-009-9532-4 PMid:19340603
S. Song, Huo, J. L., Li, D. L., Yuan, Y. Y., Yuan, F., and Miao, Y. W., Molecular cloning, sequence characterization, and gene expression profiling of a novel water buffalo (Bubalus bubalis) gene, AGPAT6, vol. 12, pp. 4116-4126, 2013.
2012
M. H. Deng, Wen, J. F., Huo, J. L., Zhu, H. S., Dai, X. Z., Zhang, Z. Q., Zhou, H., and Zou, X. X., Molecular cloning, sequence characterization of a novel pepper gene NADP-ICDH and its effect on cytoplasmic male sterility, vol. 11, pp. 3020-3031, 2012.
Balk J and Leaver CJ (2001). The PET1-CMS mitochondrial mutation in sunflower is associated with premature programmed cell death and cytochrome c release. Plant Cell 13: 1803-1818. PMid:11487694 PMCid:139137   Bartoli CG, Pastori GM and Foyer CH (2000). Ascorbate biosynthesis in mitochondria is linked to the electron transport chain between complexes III and IV. Plant Physiol. 123: 335-344. http://dx.doi.org/10.1104/pp.123.1.335 PMid:10806250 PMCid:59007   Bendtsen JD, Nielsen H, von HG and Brunak S (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340: 783-795. http://dx.doi.org/10.1016/j.jmb.2004.05.028 PMid:15223320   Benkert P, Biasini M and Schwede T (2011). Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics 27: 343-350. http://dx.doi.org/10.1093/bioinformatics/btq662 PMid:21134891 PMCid:3031035   Bergman P, Edqvist J, Farbos I and Glimelius K (2000). Male-sterile tobacco displays abnormal mitochondrial atp1 transcript accumulation and reduced floral ATP/ADP ratio. Plant Mol. Biol. 42: 531-544. http://dx.doi.org/10.1023/A:1006388814458 PMid:10798621   Camacho M, Rodriguez-Arnedo A and Bonete MJ (2002). NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii: cloning, sequence determination and overexpression in Escherichia coli. FEMS Microbiol. Lett. 209: 155-160. http://dx.doi.org/10.1111/j.1574-6968.2002.tb11125.x PMid:12007799   Carlsson J, Lagercrantz U, Sundstrom J, Teixeira R, et al. (2007). Microarray analysis reveals altered expression of a large number of nuclear genes in developing cytoplasmic male sterile Brassica napus flowers. Plant J. 49: 452-462. http://dx.doi.org/10.1111/j.1365-313X.2006.02975.x PMid:17217466   Connett MB and Hanson MR (1990). Differential mitochondrial electron transport through the cyanide-sensitive and cyanide-insensitive pathways in isonuclear lines of cytoplasmic male sterile, male fertile, and restored petunia. Plant Physiol. 93: 1634-1640. http://dx.doi.org/10.1104/pp.93.4.1634 PMid:16667667 PMCid:1062722   Corpas FJ, Barroso JB, Sandalio LM, Palma JM, et al. (1999). Peroxisomal NADP-Dependent Isocitrate Dehydrogenase. Characterization and Activity Regulation during Natural Senescence. Plant Physiol. 121: 921-928. http://dx.doi.org/10.1104/pp.121.3.921 PMid:10557241 PMCid:59455   Ducos E, Touzet P and Boutry M (2001). The male sterile G cytoplasm of wild beet displays modified mitochondrial respiratory complexes. Plant J. 26: 171-180. http://dx.doi.org/10.1046/j.1365-313x.2001.01017.x PMid:11389758   Dutilleul C, Garmier M, Noctor G, Mathieu C, et al. (2003). Leaf mitochondria modulate whole cell redox homeostasis, set antioxidant capacity, and determine stress resistance through altered signaling and diurnal regulation. Plant Cell 15: 1212-1226. http://dx.doi.org/10.1105/tpc.009464 PMid:12724545 PMCid:153727   Fieuw S, Muller-Rober B, Galvez S and Willmitzer L (1995). Cloning and expression analysis of the cytosolic NADP(+)- dependent isocitrate dehydrogenase from potato. Implications for nitrogen metabolism. Plant Physiol. 107: 905-913. http://dx.doi.org/10.1104/pp.107.3.905 PMid:7716247 PMCid:157207   Fujii S, Komatsu S and Toriyama K (2007). Retrograde regulation of nuclear gene expression in CW-CMS of rice. Plant Mol. Biol. 63: 405-417. http://dx.doi.org/10.1007/s11103-006-9097-8 PMid:17086445   Gálvez S and Gadal P (1995). On the function of the NADP-dependent isocitrate dehydrogenase isoenzymes in living organisms. Plant Sci. 105: 1-14. http://dx.doi.org/10.1016/0168-9452(94)04041-E   Gálvez S, Roche O, Bismuth E, Brown S, et al. (1998). Mitochondrial localization of a NADP-dependent [corrected] isocitrate dehydrogenase isoenzyme by using the green fluorescent protein as a marker. Proc. Natl. Acad. Sci. U. S. A. 95: 7813-7818. http://dx.doi.org/10.1073/pnas.95.13.7813 PMid:9636233 PMCid:22766   Gibon Y, Blaesing OE, Hannemann J, Carillo P, et al. (2004). A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16: 3304-3325. http://dx.doi.org/10.1105/tpc.104.025973 PMid:15548738 PMCid:535875   Gueguen V, Macherel D, Jaquinod M, Douce R, et al. (2000). Fatty acid and lipoic acid biosynthesis in higher plant mitochondria. J. Biol. Chem. 275: 5016-5025. http://dx.doi.org/10.1074/jbc.275.7.5016 PMid:10671542   Karpova OV, Kuzmin EV, Elthon TE and Newton KJ (2002). Differential expression of alternative oxidase genes in maize mitochondrial mutants. Plant Cell 14: 3271-3284. http://dx.doi.org/10.1105/tpc.005603 PMid:12468742 PMCid:151217   Kirimura K, Yoda M, Kumatani M, Ishii Y, et al. (2002). Cloning and expression of Aspergillus niger icdA gene encoding mitochondrial NADP+-specific isocitrate dehydrogenase. J. Biosci. Bioeng. 93: 136-144. PMid:16233178   Linke B and Börner T (2005). Mitochondrial effects on flower and pollen development. Mitochondrion 5: 389-402. http://dx.doi.org/10.1016/j.mito.2005.10.001 PMid:16275170   Maxwell DP, Nickels R and McIntosh L (2002). Evidence of mitochondrial involvement in the transduction of signals required for the induction of genes associated with pathogen attack and senescence. Plant J. 29: 269-279. http://dx.doi.org/10.1046/j.1365-313X.2002.01216.x PMid:11844105   Moller S, Croning MD and Apweiler R (2001). Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17: 646-653. http://dx.doi.org/10.1093/bioinformatics/17.7.646 PMid:11448883   Nakai K and Horton P (1999). PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24: 34-36. http://dx.doi.org/10.1016/S0968-0004(98)01336-X   Rhoads DM, Umbach AL, Subbaiah CC and Siedow JN (2006). Mitochondrial reactive oxygen species. Contribution to oxidative stress and interorganellar signaling. Plant Physiol. 141: 357-366. http://dx.doi.org/10.1104/pp.106.079129 PMid:16760488 PMCid:1475474   Sabar M, Gagliardi D, Balk J and Leaver CJ (2003). ORFB is a subunit of F1F(O)-ATP synthase: insight into the basis of cytoplasmic male sterility in sunflower. EMBO Rep. 4: 381-386. http://dx.doi.org/10.1038/sj.embor.embor800 PMid:12671689 PMCid:1319156   Sassi S, Gonzalez EM, Aydi S, Arrese-Igor C, et al. (2008). Tolerance of common bean to long-term osmotic stress is related to nodule carbon flux and antioxidant defenses: evidence from two cultivars with contrasting tolerance. Plant Soil 312: 39-48. http://dx.doi.org/10.1007/s11104-008-9613-5   Sienkiewicz-Porzucek A, Sulpice R, Osorio S, Krahnert I, et al. (2010). Mild reductions in mitochondrial NAD-dependent isocitrate dehydrogenase activity result in altered nitrate assimilation and pigmentation but do not impact growth. Mol. Plant 3: 156-173. http://dx.doi.org/10.1093/mp/ssp101 PMid:20035036 PMCid:2807928   Sun Q, Hu C, Hu J, Li S, et al. (2009). Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther. Protein J. 28: 341-348. http://dx.doi.org/10.1007/s10930-009-9199-7 PMid:19756991   Sweetlove LJ, Heazlewood JL, Herald V, Holtzapffel R, et al. (2002). The impact of oxidative stress on Arabidopsis mitochondria. 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Nuclear-mediated mitochondrial gene regulation and male fertility in higher plants: Light at the end of the tunnel? Proc. Natl. Acad. Sci. U. S. A. 99: 10240-10242. http://dx.doi.org/10.1073/pnas.172388899 PMid:12149484 PMCid:124896   Yui R, Iketani S, Mikami T and Kubo T (2003). Antisense inhibition of mitochondrial pyruvate dehydrogenase E1α subunit in anther tapetum causes male sterility. Plant J. 34: 57-66. http://dx.doi.org/10.1046/j.1365-313X.2003.01704.x PMid:12662309