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Q. L. Li, Guo, J. Z., Yan, N., and Li, C. C., Complete chloroplast genome sequence of cultivated Morus L. species, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.REFERENCESCai Z, Penaflor C, Kuehl JV, Leebens-Mack J, et al (2006). Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol. Biol. 6: 77. Delannoy E, Fujii S, Colas des Francs-Small C, Brundrett M, et al (2011). Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes. Mol. Biol. Evol. 28: 2077-2086. Dong W, Xu C, Cheng T, Zhou S, et al (2013). Complete chloroplast genome of Sedum sarmentosum and chloroplast genome evolution in Saxifragales. PLoS One 8: e77965. Drew BT, Ruhfel BR, Smith SA, Moore MJ, et al (2014). Another look at the root of the angiosperms reveals a familiar tale. Syst. Biol. 63: 368-382. Frazer KA, Pachter L, Poliakov A, Rubin EM, et al (2004). VISTA: computational tools for comparative genomics. Nucleic Acids Res. 32: W273-9. Goulding SE, Olmstead RG, Morden CW, Wolfe KH, et al (1996). Ebb and flow of the chloroplast inverted repeat. Mol. Gen. Genet. 252: 195-206. Hahn C, Bachmann L, Chevreux B, et al (2013). Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach. Nucleic Acids Res. 41: e129. Huang YY, Matzke AJM, Matzke M, et al (2013). Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera). PLoS One 8: e74736. Jansen RK, Palmer JD, et al (1987). A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae). Proc. Natl. Acad. Sci. USA 84: 5818-5822. Katti MV, Ranjekar PK, Gupta VS, et al (2001). Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol. Biol. Evol. 18: 1161-1167. Kong W, Yang J, et al (2016). The complete chloroplast genome sequence of Morus mongolica and a comparative analysis within the Fabidae clade. Curr. Genet. 62: 165-172. Liu Y, Huo N, Dong L, Wang Y, et al (2013). Complete chloroplast genome sequences of Mongolia medicine Artemisia frigida and phylogenetic relationships with other plants. PLoS One 8: e57533. Lohse M, Drechsel O, Bock R, et al (2007). OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52: 267-274. Millen RS, Olmstead RG, Adams KL, Palmer JD, et al (2001). Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. Plant Cell 13: 645-658. Nazareno AG, Carlsen M, Lohmann LG, et al (2015). Complete chloroplast genome of Tanaecium tetragonolobum: the first Bignoniaceae plastome. PLoS One 10: e0129930. Nock CJ, Baten A, King GJ, et al (2014). Complete chloroplast genome of Macadamia integrifolia confirms the position of the Gondwanan early-diverging eudicot family Proteaceae. BMC Genomics 15 (Suppl 9): S13. Nguyen PA, Kim JS, Kim JH, et al (2015). The complete chloroplast genome of colchicine plants (Colchicum autumnale L. and Gloriosa superba L.) and its application for identifying the genus. Planta 242: 223-237. Rajendrakumar P, Biswal AK, Balachandran SM, Srinivasarao K, et al (2007). Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intergenic regions. Bioinformatics 23: 1-4. Ravi V, Khurana JP, Tyagi AK, Khurana P, et al (2006). The chloroplast genome of mulberry: complete nucleotide sequence, gene organization and comparative analysis. Tree Genet. Genomes 3: 49-59. Ravi V, Khurana JP, Tyagi AK, Khurana P, et al (2008). An update on chloroplast genome. Plant Syst. Evol. 271: 101-122. Schmitz-Linneweber C, Regel R, Du TG, Hupfer H, et al (2002). The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. Mol. Biol. Evol. 19: 1602-1612. Shaw J, Lickey EB, Schilling EE, Small RL, et al (2007). Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am. J. Bot. 94: 275-288. Steane DA, et al (2005). Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae). DNA Res. 12: 215-220. Su HJ, Hogenhout SA, Al-Sadi AM, Kuo CH, et al (2014). Complete chloroplast genome sequence of Omani lime (Citrus aurantiifolia) and comparative analysis within the rosids. PLoS One 9: e113049. Tamura K, Stecher G, Peterson D, Filipski A, et al (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30: 2725-2729. Walker JF, Zanis MJ, Emery NC, et al (2014). Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae). Am. J. Bot. 101: 722-729. Wu CS, Lai YT, Lin CP, Wang YN, et al (2009). Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy. Mol. Phylogenet. Evol. 52: 115-124. Yang Z, Yoder AD, et al (1999). Estimation of the transition/transversion rate bias and species sampling. J. Mol. Evol. 48: 274-283. Zerega NJ, Clement WL, Datwyler SL, Weiblen GD, et al (2005). Biogeography and divergence times in the mulberry family (Moraceae). Mol. Phylogenet. Evol. 37: 402-416. Zhang H, Li C, Miao H, Xiong S, et al (2013). Insights from the complete chloroplast genome into the evolution of Sesamum indicum L. PLoS One 8: e80508. Zhang SD, Soltis DE, Yang Y, Li DZ, et al (2011). Multi-gene analysis provides a well-supported phylogeny of Rosales. Mol. Phylogenet. Evol. 60: 21-28.