Publications

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2012
R. M. Rana, Dong, S., Ali, Z., Huang, J., and Zhang, H. S., Regulation of ATG6/Beclin-1 homologs by abiotic stresses and hormones in rice (Oryza sativa L.), vol. 11, pp. 3676-3687, 2012.
Cao Y and Klionsky DJ (2007). Physiological functions of Atg6/Beclin 1: a unique autophagy-related protein. Cell Res. 17: 839-849. http://dx.doi.org/10.1038/cr.2007.78 PMid:17893711   Chen X, Gu Z, Xin D, Hao L, et al. (2011). Identification and characterization of putative CIPK genes in maize. J. Genet. Genom. 38: 77-87. http://dx.doi.org/10.1016/j.jcg.2011.01.005 PMid:21356527   Fujiki Y, Yoshimoto K and Ohsumi Y (2007). An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 143: 1132-1139. http://dx.doi.org/10.1104/pp.106.093864 PMid:17259285 PMCid:1820928   Gu X and Vander Velden K (2002). DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein 3687 Regulation of ATG6 homologs by abiotic stresses and hormones family. Bioinformatics 18: 500-501. http://dx.doi.org/10.1093/bioinformatics/18.3.500 PMid:11934757   Harrison-Lowe NJ and Olsen LJ (2008). Autophagy protein 6 (ATG6) is required for pollen germination in Arabidopsis thaliana. Autophagy 4.   Hashiguchi Y, Furuta Y, Kawahara R and Nishida M (2007). Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback. Gene 396: 170-179. http://dx.doi.org/10.1016/j.gene.2007.03.015 PMid:17467198   Horton P, Park KJ, Obayashi T and Nakai K (2006). Protein Subcellular Localization Prediction with WoLF PSORT. Citeseer.   Huang J, Wang MM, Bao YM, Sun SJ, et al. (2008). SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (Oryza sativa L.). Gene 424: 71-79. http://dx.doi.org/10.1016/j.gene.2008.07.027 PMid:18755256   Hung KT and Kao CH (2004). Hydrogen peroxide is necessary for abscisic acid-induced senescence of rice leaves. J. Plant Physiol. 161: 1347-1357. http://dx.doi.org/10.1016/j.jplph.2004.05.011 PMid:15658805   Jung KH, Dardick C, Bartley LE, Cao P, et al. (2008). Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One 3: e3337. http://dx.doi.org/10.1371/journal.pone.0003337 PMid:18836531 PMCid:2556097   Kametaka S, Okano T, Ohsumi M and Ohsumi Y (1998). Apg14p and Apg6/Vps30p form a protein complex essential for autophagy in the yeast, Saccharomyces cerevisiae. J. Biol. Chem. 273: 22284-22291. http://dx.doi.org/10.1074/jbc.273.35.22284 PMid:9712845   Liu Y, Schiff M, Czymmek K, Talloczy Z, et al. (2005). Autophagy regulates programmed cell death during the plant innate immune response. Cell 121: 567-577. http://dx.doi.org/10.1016/j.cell.2005.03.007 PMid:15907470   Meng XB, Zhao WS, Lin RM, Wang M, et al. (2006). Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene. DNA Seq. 17: 41-48. http://dx.doi.org/10.1080/10425170500476509 PMid:16753816   Michiorri S, Gelmetti V, Giarda E, Lombardi F, et al. (2010). 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Cell Res. 17: 249-263. PMid:17339883   Ramalingam J, Pathan MS, Feril O, Ross K, et al. (2006). Structural and functional analyses of the wheat genomes based on expressed sequence tags (ESTs) related to abiotic stresses. Genome 49: 1324-1340. http://dx.doi.org/10.1139/g06-094 PMid:17218960   Rana RM, Dong S, Ali Z, Khan AI, et al. (2012). Identification and characterization of the Bcl-2-associated athanogene (BAG) protein family in rice. Afr. J. Biotechnol. 11: 88-99.   Sato Y and Yokoya S (2008). Enhanced tolerance to drought stress in transgenic rice plants overexpressing a small heat-shock protein, sHSP17.7. Plant Cell Rep. 27: 329-334. http://dx.doi.org/10.1007/s00299-007-0470-0 PMid:17968552   Sinha S and Levine B (2008). The autophagy effector Beclin 1: a novel BH3-only protein. Oncogene 27 (Suppl 1): S137-S148. http://dx.doi.org/10.1038/onc.2009.51 PMid:19641499 PMCid:2731580   Suzuki K, Kirisako T, Kamada Y, Mizushima N, et al. (2001). The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation. EMBO J. 20: 5971-5981. http://dx.doi.org/10.1093/emboj/20.21.5971 PMid:11689437 PMCid:125692   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. http://dx.doi.org/10.1093/nar/22.22.4673 PMid:7984417 PMCid:308517   Waterhouse AM, Procter JB, Martin DM, Clamp M, et al. (2009). Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191. http://dx.doi.org/10.1093/bioinformatics/btp033 PMid:19151095 PMCid:2672624   Wolfe KH, Gouy M, Yang YW, Sharp PM, et al. (1989). Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. U. S. A. 86: 6201-6205. http://dx.doi.org/10.1073/pnas.86.16.6201 PMid:2762323 PMCid:297805   Wu S, Yu Z, Wang F, Li W, et al. (2007). Cloning, characterization, and transformation of the phosphoethanolamine N-methyltransferase gene (ZmPEAMT1) in maize (Zea mays L.). Mol. Biotechnol. 36: 102-112. http://dx.doi.org/10.1007/s12033-007-0009-1 PMid:17914189   Xia K, Liu T, Ouyang J, Wang R, et al. (2011). Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.). DNA Res. 18: 363-377. http://dx.doi.org/10.1093/dnares/dsr024 PMid:21795261 PMCid:3190957   Yang Z (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591. http://dx.doi.org/10.1093/molbev/msm088 PMid:17483113   Yang Z and Nielsen R (2002). Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19: 908-917. http://dx.doi.org/10.1093/oxfordjournals.molbev.a004148 PMid:12032247   Yang Z, Nielsen R, Goldman N and Pedersen AM (2000). Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449. PMid:10790415 PMCid:1461088