Publications

Found 5 results
Filters: Author is B.P. Hoh  [Clear All Filters]
2013
Z. Zakaria, Umi, S. H., Mokhtar, S. S., Mokhtar, U., Zaiharina, M. Z., Aziz, A. T. A., and Hoh, B. P., An alternate method for DNA and RNA extraction from clotted blood, vol. 12. pp. 302-311, 2013.
Abe J, Jibiki T, Noma S, Nakajima T, et al. (2005). Gene expression profiling of the effect of high-dose intravenous Ig in patients with Kawasaki disease. J. Immunol. 174: 5837-5845. PMid:15843588   Adkins KK, Strom DA, Jacobson TE, Seemann CR, et al. (2002). Utilizing genomic DNA purified from clotted blood samples for single nucleotide polymorphism genotyping. Arch. Pathol. Lab. Med. 126: 266-270. PMid:11860298   Basuni AA, Butterworth LA, Cooksley G, Locarnini S, et al. (2000). An efficient extraction method from blood clots for studies requiring both host and viral DNA. J. Viral Hepat. 7: 241-243. http://dx.doi.org/10.1046/j.1365-2893.2000.00206.x PMid:10849268   Clements DN, Wood S, Carter SD and Ollier WE (2008). Assessment of the quality and quantity of genomic DNA recovered from canine blood samples by three different extraction methods. Res. Vet. Sci. 85: 74-79. http://dx.doi.org/10.1016/j.rvsc.2007.09.009 PMid:18031774   Cukier HN, Pericak-Vance MA, Gilbert JR and Hedges DJ (2009). Sample degradation leads to false-positive copy number variation calls in multiplex real-time polymerase chain reaction assays. Anal. Biochem. 386: 288-290. http://dx.doi.org/10.1016/j.ab.2008.11.040 PMid:19121619   De Paula SO, Nunes C, Matos R, de Oliveira ZM, et al. (2001). Comparison of techniques for extracting viral RNA from isolation-negative serum for dengue diagnosis by the polymerase chain reaction. J. Virol Methods 98: 119-125. http://dx.doi.org/10.1016/S0166-0934(01)00371-8   Fleige S and Pfaffl MW (2006). RNA integrity and the effect on the real-time qRT-PCR performance. Mol. Aspects Med. 27: 126-139. http://dx.doi.org/10.1016/j.mam.2005.12.003 PMid:16469371   Imbeaud S, Graudens E, Boulanger V, Barlet X, et al. (2005). Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces. Nucleic Acids Res. 33: e56. http://dx.doi.org/10.1093/nar/gni054 PMid:15800207 PMCid:1072807   Kanai N, Fujii T, Saito K and Tokoyama T (1994). Rapid and simple method for preparation of genomic DNA from easily obtainable clotted blood. J. Clin. Pathol. 47: 1043-1044. http://dx.doi.org/10.1136/jcp.47.11.1043 PMid:7829682 PMCid:503071   Kang TW, Jeon YJ, Jang E, Kim HJ, et al. (2008). Copy number variations (CNVs) identified in Korean individuals. BMC Genomics 9: 492. http://dx.doi.org/10.1186/1471-2164-9-492 PMid:18928558 PMCid:2576253   Klimek-Ochab M, Brzezińska-Rodak M, Żymańczyk-Duda E, Lejczak B, et al. (2011). Comparative study of fungal cell disruption - scope and limitations of the methods. Folia Microbiol. 56: 469-475. http://dx.doi.org/10.1007/s12223-011-0069-2 PMid:21901292 PMCid:3189342   Mueller O, Lightfoot S and Schroeder A (2004). RNA Integrity Number (RIN) - Standardization of RNA Quality Control. Agilent Application Note, Publication 5989-1165EN, 1-8.   Nishida N, Koike A, Tajima A, Ogasawara Y, et al. (2008). Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals. BMC Genomics 9: 431. http://dx.doi.org/10.1186/1471-2164-9-431 PMid:18803882 PMCid:2566316   Salazar LA, Hirata MH, Cavalli SA, Machado MO, et al. (1998). Optimized procedure for DNA isolation from fresh and cryopreserved clotted human blood useful in clinical molecular testing. Clin. Chem. 44: 1748-1450. PMid:9702967   Santella RM (2006). Approaches to DNA/RNA extraction and whole genome application. Cancer Epidemiol. Biomarkers Prev. 15: 1585-1587. http://dx.doi.org/10.1158/1055-9965.EPI-06-0631 PMid:16985017   Schoor O, Weinschenk T, Hennenlotter J, Corvin S, et al. (2003). Moderate degradation does not preclude microarray analysis of small amounts of RNA. Bio Techniques 35: 1192-1201. PMid:14682053   Schoppee Bortz PD and Wamhoff BR (2011). Chromatin immunoprecipitation (ChIP): revisiting the efficacy of sample preparation, sonication, quantification of sheared DNA, and analysis via PCR. PLoS One 6: e26015. http://dx.doi.org/10.1371/journal.pone.0026015 PMid:22046253 PMCid:3201960   Se Fum Wong S, Kuei JJ, Prasad N, Agonafer E, et al. (2007). A simple method for DNA isolation from clotted blood extricated rapidly from serum separator tubes. Clin. Chem. 53: 522-524. http://dx.doi.org/10.1373/clinchem.2006.078212 PMid:17234731   Vogler C, Gschwind L, Röthlisberger B, Huber A, et al. (2010). Microarray-based maps of copy-number variant regions in European and Sub-Saharan populations. PLoS One 5: e15246. http://dx.doi.org/10.1371/journal.pone.0015246 PMid:21179565 PMCid:3002949
B. P. Hoh, Siraj, S. S., Tan, S. G., and Yusoff, K., Segregation and genetic linkage analyses of river catfish, Mystus nemurus, based on microsatellite markers, vol. 12, pp. 2578-2593, 2013.
Y. Y. Yam, Hoh, B. P., Othman, N. H., Hassan, S., Yahya, M. M., Zakaria, Z., and Ankathil, R., Somatic copy-neutral loss of heterozygosity and copy number abnormalities in Malaysian sporadic colorectal carcinoma patients, vol. 12, pp. 319-327, 2013.
Andersen CL, Wiuf C, Kruhoffer M, Korsgaard M, et al. (2007). Frequent occurrence of uniparental disomy in colorectal cancer. Carcinogenesis 28: 38-48. http://dx.doi.org/10.1093/carcin/bgl086 PMid:16774939   Aragane H, Sakakura C, Nakanishi M, Yasuoka R, et al. (2001). Chromosomal aberrations in colorectal cancers and liver metastases analyzed by comparative genomic hybridization. Int. J. Cancer 94: 623-629. http://dx.doi.org/10.1002/ijc.1522 PMid:11745455   Ashktorab H, Schaffer AA, Daremipouran M, Smoot DT, et al. (2010). Distinct genetic alterations in colorectal cancer. PLoS One 5: e8879. http://dx.doi.org/10.1371/journal.pone.0008879 PMid:20126641 PMCid:2811180   Attisano L and Wrana JL (2002). Signal transduction by the TGF-β superfamily. Science 296: 1646-1647. http://dx.doi.org/10.1126/science.1071809 PMid:12040180   Barton DE, Foellmer BE, Du J, Tamm J, et al. (1988). Chromosomal mapping of genes for transforming growth factors beta 2 and beta 3 in man and mouse: dispersion of TGF-beta gene family. Oncogene Res. 3: 323-331. PMid:3226728   Chen L, Chan TH and Guan XY (2010). Chromosome 1q21 amplification and oncogenes in hepatocellular carcinoma. Acta Pharmacol. Sin. 31: 1165-1171. http://dx.doi.org/10.1038/aps.2010.94 PMid:20676120   Choi SW, Lee KJ, Bae YA, Min KO, et al. (2002). Genetic classification of colorectal cancer based on chromosomal loss and microsatellite instability predicts survival. Clin. Cancer Res. 8: 2311-2322. PMid:12114436   De Angelis PM, Stokke T, Beigi M, Mjaland O, et al. (2001). Prognostic significance of recurrent chromosomal aberrations detected by comparative genomic hybridization in sporadic colorectal cancer. Int. J. Colorectal Dis. 16: 38-45. http://dx.doi.org/10.1007/s003840000275 PMid:11317696   Diep CB, Teixeira MR, Thorstensen L, Wiig JN, et al. (2004). Genome characteristics of primary carcinomas, local recurrences, carcinomatoses, and liver metastases from colorectal cancer patients. Mol. Cancer 3: 6. http://dx.doi.org/10.1186/1476-4598-3-6 PMid:14977426 PMCid:373453   Diep CB, Kleivi K, Ribeiro FR, Teixeira MR, et al. (2006). The order of genetic events associated with colorectal cancer progression inferred from meta-analysis of copy number changes. Genes Chromosomes Cancer 45: 31-41. http://dx.doi.org/10.1002/gcc.20261 PMid:16145679   Fearon ER and Vogelstein B (1990). A genetic model for colorectal tumorigenesis. Cell 61: 759-767. http://dx.doi.org/10.1016/0092-8674(90)90186-I   He QJ, Zeng WF, Sham JS, Xie D, et al. (2003). Recurrent genetic alterations in 26 colorectal carcinomas and 21 adenomas from Chinese patients. Cancer Genet. Cytogenet. 144: 112-118. http://dx.doi.org/10.1016/S0165-4608(02)00959-7   Knosel T, Schluns K, Stein U, Schwabe H, et al. (2004). Chromosomal alterations during lymphatic and liver metastasis formation of colorectal cancer. Neoplasia 6: 23-28. PMid:15068668 PMCid:1508628   Lagerstedt KK, Kristiansson E, Lonnroth C, Andersson M, et al. (2010). Genes with relevance for early to late progression of colon carcinoma based on combined genomic and transcriptomic information from the same patients. Cancer Inform. 9: 79-91. PMid:20467480 PMCid:2867635   Lin CH, Lin JK, Chang SC, Chang YH, et al. (2011). Molecular profile and copy number analysis of sporadic colorectal cancer in Taiwan. J. Biomed. Sci. 18: 36. http://dx.doi.org/10.1186/1423-0127-18-36 PMid:21645411 PMCid:3123622   Lips EH, van Eijk R, de Graaf EJ, Oosting J, et al. (2008). Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis. BMC Cancer 8: 314. http://dx.doi.org/10.1186/1471-2407-8-314 PMid:18959792 PMCid:2584339   Nakagawa H, Liyanarachchi S, Davuluri RV, Auer H, et al. (2004). Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles. Oncogene 23: 7366-7377. http://dx.doi.org/10.1038/sj.onc.1208013 PMid:15326482   Nakao K, Mehta KR, Fridlyand J, Moore DH, et al. (2004). High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization. Carcinogenesis 25: 1345-1357. http://dx.doi.org/10.1093/carcin/bgh134 PMid:15001537   Nannya Y, Sanada M, Nakazaki K, Hosoya N, et al. (2005). A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res. 65: 6071-6079. http://dx.doi.org/10.1158/0008-5472.CAN-05-0465 PMid:16024607   National Cancer Registry (2006). Malaysian Cancer Statistics. Ministry of Health Malaysia, Kuala Lumpur.   Poeaim S, Rerkamnuaychoke B, Jesdapatarakul S and Campiranon A (2005). Chromosome alterations in colorectal cancer in Thai patients. Cancer Genet. Cytogenet. 160: 152-159. http://dx.doi.org/10.1016/j.cancergencyto.2004.12.011 PMid:15993271   Postma C, Koopman M, Buffart TE, Eijk PP, et al. (2009). DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer. Ann. Oncol. 20: 1048-1056. http://dx.doi.org/10.1093/annonc/mdn738 PMid:19150955   Poulogiannis G, Ichimura K, Hamoudi RA, Luo F, et al. (2010). Prognostic relevance of DNA copy number changes in colorectal cancer. J. Pathol. 220: 338-347. http://dx.doi.org/10.1002/path.2640 PMid:19911421   Sheffer M, Bacolod MD, Zuk O, Giardina SF, et al. (2009). Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer. Proc. Natl. Acad. Sci. U. S. A. 106: 7131-7136. http://dx.doi.org/10.1073/pnas.0902232106 PMid:19359472 PMCid:2678450   Staub E, Grone J, Mennerich D, Ropcke S, et al. (2006). A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer. Mol. Cancer 5: 37. http://dx.doi.org/10.1186/1476-4598-5-37 PMid:16982006 PMCid:1601966   Stratton MR, Campbell PJ and Futreal PA (2009). The cancer genome. Nature 458: 719-724. http://dx.doi.org/10.1038/nature07943 PMid:19360079 PMCid:2821689   van Puijenbroek M, Middeldorp A, Tops CM, van Eijk R, et al. (2008). Genome-wide copy neutral LOH is infrequent in familial and sporadic microsatellite unstable carcinomas. Fam. Cancer 7: 319-330. http://dx.doi.org/10.1007/s10689-008-9194-8 PMid:18415027