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Found 5 results
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“Effect of DNase treatment on RNA extraction from preimplantation murine embryos”, vol. 14, pp. 10172-10184, 2015.
, “A novel rare copy number variant of the ABCF1 gene identified among dengue fever patients from Peninsular Malaysia”, vol. 13, pp. 980-985, 2014.
, “An alternate method for DNA and RNA extraction from clotted blood”, vol. 12. pp. 302-311, 2013.
, Abe J, Jibiki T, Noma S, Nakajima T, et al. (2005). Gene expression profiling of the effect of high-dose intravenous Ig in patients with Kawasaki disease. J. Immunol. 174: 5837-5845.
PMid:15843588
Adkins KK, Strom DA, Jacobson TE, Seemann CR, et al. (2002). Utilizing genomic DNA purified from clotted blood samples for single nucleotide polymorphism genotyping. Arch. Pathol. Lab. Med. 126: 266-270.
PMid:11860298
Basuni AA, Butterworth LA, Cooksley G, Locarnini S, et al. (2000). An efficient extraction method from blood clots for studies requiring both host and viral DNA. J. Viral Hepat. 7: 241-243.
http://dx.doi.org/10.1046/j.1365-2893.2000.00206.x
PMid:10849268
Clements DN, Wood S, Carter SD and Ollier WE (2008). Assessment of the quality and quantity of genomic DNA recovered from canine blood samples by three different extraction methods. Res. Vet. Sci. 85: 74-79.
http://dx.doi.org/10.1016/j.rvsc.2007.09.009
PMid:18031774
Cukier HN, Pericak-Vance MA, Gilbert JR and Hedges DJ (2009). Sample degradation leads to false-positive copy number variation calls in multiplex real-time polymerase chain reaction assays. Anal. Biochem. 386: 288-290.
http://dx.doi.org/10.1016/j.ab.2008.11.040
PMid:19121619
De Paula SO, Nunes C, Matos R, de Oliveira ZM, et al. (2001). Comparison of techniques for extracting viral RNA from isolation-negative serum for dengue diagnosis by the polymerase chain reaction. J. Virol Methods 98: 119-125.
http://dx.doi.org/10.1016/S0166-0934(01)00371-8
Fleige S and Pfaffl MW (2006). RNA integrity and the effect on the real-time qRT-PCR performance. Mol. Aspects Med. 27: 126-139.
http://dx.doi.org/10.1016/j.mam.2005.12.003
PMid:16469371
Imbeaud S, Graudens E, Boulanger V, Barlet X, et al. (2005). Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces. Nucleic Acids Res. 33: e56.
http://dx.doi.org/10.1093/nar/gni054
PMid:15800207 PMCid:1072807
Kanai N, Fujii T, Saito K and Tokoyama T (1994). Rapid and simple method for preparation of genomic DNA from easily obtainable clotted blood. J. Clin. Pathol. 47: 1043-1044.
http://dx.doi.org/10.1136/jcp.47.11.1043
PMid:7829682 PMCid:503071
Kang TW, Jeon YJ, Jang E, Kim HJ, et al. (2008). Copy number variations (CNVs) identified in Korean individuals. BMC Genomics 9: 492.
http://dx.doi.org/10.1186/1471-2164-9-492
PMid:18928558 PMCid:2576253
Klimek-Ochab M, Brzezińska-Rodak M, Żymańczyk-Duda E, Lejczak B, et al. (2011). Comparative study of fungal cell disruption - scope and limitations of the methods. Folia Microbiol. 56: 469-475.
http://dx.doi.org/10.1007/s12223-011-0069-2
PMid:21901292 PMCid:3189342
Mueller O, Lightfoot S and Schroeder A (2004). RNA Integrity Number (RIN) - Standardization of RNA Quality Control. Agilent Application Note, Publication 5989-1165EN, 1-8.
Nishida N, Koike A, Tajima A, Ogasawara Y, et al. (2008). Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals. BMC Genomics 9: 431.
http://dx.doi.org/10.1186/1471-2164-9-431
PMid:18803882 PMCid:2566316
Salazar LA, Hirata MH, Cavalli SA, Machado MO, et al. (1998). Optimized procedure for DNA isolation from fresh and cryopreserved clotted human blood useful in clinical molecular testing. Clin. Chem. 44: 1748-1450.
PMid:9702967
Santella RM (2006). Approaches to DNA/RNA extraction and whole genome application. Cancer Epidemiol. Biomarkers Prev. 15: 1585-1587.
http://dx.doi.org/10.1158/1055-9965.EPI-06-0631
PMid:16985017
Schoor O, Weinschenk T, Hennenlotter J, Corvin S, et al. (2003). Moderate degradation does not preclude microarray analysis of small amounts of RNA. Bio Techniques 35: 1192-1201.
PMid:14682053
Schoppee Bortz PD and Wamhoff BR (2011). Chromatin immunoprecipitation (ChIP): revisiting the efficacy of sample preparation, sonication, quantification of sheared DNA, and analysis via PCR. PLoS One 6: e26015.
http://dx.doi.org/10.1371/journal.pone.0026015
PMid:22046253 PMCid:3201960
Se Fum Wong S, Kuei JJ, Prasad N, Agonafer E, et al. (2007). A simple method for DNA isolation from clotted blood extricated rapidly from serum separator tubes. Clin. Chem. 53: 522-524.
http://dx.doi.org/10.1373/clinchem.2006.078212
PMid:17234731
Vogler C, Gschwind L, Röthlisberger B, Huber A, et al. (2010). Microarray-based maps of copy-number variant regions in European and Sub-Saharan populations. PLoS One 5: e15246.
http://dx.doi.org/10.1371/journal.pone.0015246
PMid:21179565 PMCid:3002949
“Segregation and genetic linkage analyses of river catfish, Mystus nemurus, based on microsatellite markers”, vol. 12, pp. 2578-2593, 2013.
, “Somatic copy-neutral loss of heterozygosity and copy number abnormalities in Malaysian sporadic colorectal carcinoma patients”, vol. 12, pp. 319-327, 2013.
, Andersen CL, Wiuf C, Kruhoffer M, Korsgaard M, et al. (2007). Frequent occurrence of uniparental disomy in colorectal cancer. Carcinogenesis 28: 38-48.
http://dx.doi.org/10.1093/carcin/bgl086
PMid:16774939
Aragane H, Sakakura C, Nakanishi M, Yasuoka R, et al. (2001). Chromosomal aberrations in colorectal cancers and liver metastases analyzed by comparative genomic hybridization. Int. J. Cancer 94: 623-629.
http://dx.doi.org/10.1002/ijc.1522
PMid:11745455
Ashktorab H, Schaffer AA, Daremipouran M, Smoot DT, et al. (2010). Distinct genetic alterations in colorectal cancer. PLoS One 5: e8879.
http://dx.doi.org/10.1371/journal.pone.0008879
PMid:20126641 PMCid:2811180
Attisano L and Wrana JL (2002). Signal transduction by the TGF-β superfamily. Science 296: 1646-1647.
http://dx.doi.org/10.1126/science.1071809
PMid:12040180
Barton DE, Foellmer BE, Du J, Tamm J, et al. (1988). Chromosomal mapping of genes for transforming growth factors beta 2 and beta 3 in man and mouse: dispersion of TGF-beta gene family. Oncogene Res. 3: 323-331.
PMid:3226728
Chen L, Chan TH and Guan XY (2010). Chromosome 1q21 amplification and oncogenes in hepatocellular carcinoma. Acta Pharmacol. Sin. 31: 1165-1171.
http://dx.doi.org/10.1038/aps.2010.94
PMid:20676120
Choi SW, Lee KJ, Bae YA, Min KO, et al. (2002). Genetic classification of colorectal cancer based on chromosomal loss and microsatellite instability predicts survival. Clin. Cancer Res. 8: 2311-2322.
PMid:12114436
De Angelis PM, Stokke T, Beigi M, Mjaland O, et al. (2001). Prognostic significance of recurrent chromosomal aberrations detected by comparative genomic hybridization in sporadic colorectal cancer. Int. J. Colorectal Dis. 16: 38-45.
http://dx.doi.org/10.1007/s003840000275
PMid:11317696
Diep CB, Teixeira MR, Thorstensen L, Wiig JN, et al. (2004). Genome characteristics of primary carcinomas, local recurrences, carcinomatoses, and liver metastases from colorectal cancer patients. Mol. Cancer 3: 6.
http://dx.doi.org/10.1186/1476-4598-3-6
PMid:14977426 PMCid:373453
Diep CB, Kleivi K, Ribeiro FR, Teixeira MR, et al. (2006). The order of genetic events associated with colorectal cancer progression inferred from meta-analysis of copy number changes. Genes Chromosomes Cancer 45: 31-41.
http://dx.doi.org/10.1002/gcc.20261
PMid:16145679
Fearon ER and Vogelstein B (1990). A genetic model for colorectal tumorigenesis. Cell 61: 759-767.
http://dx.doi.org/10.1016/0092-8674(90)90186-I
He QJ, Zeng WF, Sham JS, Xie D, et al. (2003). Recurrent genetic alterations in 26 colorectal carcinomas and 21 adenomas from Chinese patients. Cancer Genet. Cytogenet. 144: 112-118.
http://dx.doi.org/10.1016/S0165-4608(02)00959-7
Knosel T, Schluns K, Stein U, Schwabe H, et al. (2004). Chromosomal alterations during lymphatic and liver metastasis formation of colorectal cancer. Neoplasia 6: 23-28.
PMid:15068668 PMCid:1508628
Lagerstedt KK, Kristiansson E, Lonnroth C, Andersson M, et al. (2010). Genes with relevance for early to late progression of colon carcinoma based on combined genomic and transcriptomic information from the same patients. Cancer Inform. 9: 79-91.
PMid:20467480 PMCid:2867635
Lin CH, Lin JK, Chang SC, Chang YH, et al. (2011). Molecular profile and copy number analysis of sporadic colorectal cancer in Taiwan. J. Biomed. Sci. 18: 36.
http://dx.doi.org/10.1186/1423-0127-18-36
PMid:21645411 PMCid:3123622
Lips EH, van Eijk R, de Graaf EJ, Oosting J, et al. (2008). Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis. BMC Cancer 8: 314.
http://dx.doi.org/10.1186/1471-2407-8-314
PMid:18959792 PMCid:2584339
Nakagawa H, Liyanarachchi S, Davuluri RV, Auer H, et al. (2004). Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles. Oncogene 23: 7366-7377.
http://dx.doi.org/10.1038/sj.onc.1208013
PMid:15326482
Nakao K, Mehta KR, Fridlyand J, Moore DH, et al. (2004). High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization. Carcinogenesis 25: 1345-1357.
http://dx.doi.org/10.1093/carcin/bgh134
PMid:15001537
Nannya Y, Sanada M, Nakazaki K, Hosoya N, et al. (2005). A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res. 65: 6071-6079.
http://dx.doi.org/10.1158/0008-5472.CAN-05-0465
PMid:16024607
National Cancer Registry (2006). Malaysian Cancer Statistics. Ministry of Health Malaysia, Kuala Lumpur.
Poeaim S, Rerkamnuaychoke B, Jesdapatarakul S and Campiranon A (2005). Chromosome alterations in colorectal cancer in Thai patients. Cancer Genet. Cytogenet. 160: 152-159.
http://dx.doi.org/10.1016/j.cancergencyto.2004.12.011
PMid:15993271
Postma C, Koopman M, Buffart TE, Eijk PP, et al. (2009). DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer. Ann. Oncol. 20: 1048-1056.
http://dx.doi.org/10.1093/annonc/mdn738
PMid:19150955
Poulogiannis G, Ichimura K, Hamoudi RA, Luo F, et al. (2010). Prognostic relevance of DNA copy number changes in colorectal cancer. J. Pathol. 220: 338-347.
http://dx.doi.org/10.1002/path.2640
PMid:19911421
Sheffer M, Bacolod MD, Zuk O, Giardina SF, et al. (2009). Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer. Proc. Natl. Acad. Sci. U. S. A. 106: 7131-7136.
http://dx.doi.org/10.1073/pnas.0902232106
PMid:19359472 PMCid:2678450
Staub E, Grone J, Mennerich D, Ropcke S, et al. (2006). A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer. Mol. Cancer 5: 37.
http://dx.doi.org/10.1186/1476-4598-5-37
PMid:16982006 PMCid:1601966
Stratton MR, Campbell PJ and Futreal PA (2009). The cancer genome. Nature 458: 719-724.
http://dx.doi.org/10.1038/nature07943
PMid:19360079 PMCid:2821689
van Puijenbroek M, Middeldorp A, Tops CM, van Eijk R, et al. (2008). Genome-wide copy neutral LOH is infrequent in familial and sporadic microsatellite unstable carcinomas. Fam. Cancer 7: 319-330.
http://dx.doi.org/10.1007/s10689-008-9194-8
PMid:18415027