Publications

Boyko A, Kathiria P, Zemp FJ, Yao Y, et al. (2007). Transgenerational changes in the genome stability and methylation in pathogen-infected plants: (virus-induced plant genome instability). Nucleic Acids Res. 35: 1714-1725. http://dx.doi.org/10.1093/nar/gkm029 PMid:17311811 PMCid:1865051   Chan SW, Henderson IR and Jacobsen SE (2005). Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6: 351-360. http://dx.doi.org/10.1038/nrg1601 PMid:15861207   Chinnusamy V and Zhu JK (2009). Epigenetic regulation of stress responses in plants. Curr. Opin. Plant Biol. 12: 133-139. http://dx.doi.org/10.1016/j.pbi.2008.12.006 PMid:19179104 PMCid:3139470   Delauney AJ and Verma DPS (1993). Proline biosynthesis and osmoregulation in plants. Plant J. 4: 215-223. http://dx.doi.org/10.1046/j.1365-313X.1993.04020215.x   Dong ZY, Wang YM, Zhang ZJ, Shen Y, et al. (2006). Extent and pattern of DNA methylation alteration in rice lines derived from introgressive hybridization of rice and Zizania latifolia Griseb. Theor. Appl. Genet. 113: 196-205. http://dx.doi.org/10.1007/s00122-006-0286-2 PMid:16791687   Hare P and Cress W (1997). Metabolic implications of stress-induced proline accumulation in plants. Plant Growth Regul. 21: 79-102. http://dx.doi.org/10.1023/A:1005703923347   Hu CA, Delauney AJ and Verma DP (1992). A bifunctional enzyme (delta 1-pyrroline-5-carboxylate synthetase) catalyzes the first two steps in proline biosynthesis in plants. Proc. Natl. Acad. Sci. U. S. A. 89: 9354-9358. http://dx.doi.org/10.1073/pnas.89.19.9354 PMid:1384052 PMCid:50125   Jain M, Nijhawan A, Tyagi AK and Khurana JP (2006). Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem. Biophys. Res. Commun. 345: 646-651. http://dx.doi.org/10.1016/j.bbrc.2006.04.140 PMid:16690022   Karan R, DeLeon T, Biradar H and Subudhi PK (2012). Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes. PLoS One 7: e40203. http://dx.doi.org/10.1371/journal.pone.0040203 PMid:22761959 PMCid:3386172   Kiyosue T, Yoshiba Y, Yamaguchi-Shinozaki K and Shinozaki K (1996). A nuclear gene encoding mitochondrial proline dehydrogenase, an enzyme involved in proline metabolism, is upregulated by proline but downregulated by dehydration in Arabidopsis. Plant Cell 8: 1323-1335. PMid:8776899 PMCid:161248   Livak KJ and Schmittgen TD (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2-DDCT method. Methods 25: 402-408. http://dx.doi.org/10.1006/meth.2001.1262 PMid:11846609   Lutts S, Majerus V and Kinet JM (1999). NaCl effects on proline metabolism in rice (Oryza sativa) seedlings. Physiol. Plant. 105: 450-458. http://dx.doi.org/10.1034/j.1399-3054.1999.105309.x   Mattioli R, Costantino P and Trovato M (2009). Proline accumulation in plants: not only stress. Plant Signal. Behav. 4: 1016-1018. http://dx.doi.org/10.4161/psb.4.11.9797 PMid:20009553 PMCid:2819507   Molinier J, Ries G, Zipfel C and Hohn B (2006). Transgeneration memory of stress in plants. Nature 442: 1046-1049. http://dx.doi.org/10.1038/nature05022 PMid:16892047   Nanjo T, Fujita M, Seki M, Kato T, et al. (2003). Toxicity of free proline revealed in an Arabidopsis T-DNA-tagged mutant deficient in proline dehydrogenase. Plant Cell Physiol. 44: 541-548. http://dx.doi.org/10.1093/pcp/pcg066 PMid:12773641   Peng Z, Lu Q and Verma DP (1996). Reciprocal regulation of delta 1-pyrroline-5-carboxylate synthetase and proline dehydrogenase genes controls proline levels during and after osmotic stress in plants. Mol. Gen. Genet. 253: 334-341. http://dx.doi.org/10.1007/PL00008600 PMid:9003320   Rangwala SH and Richards EJ (2004). The value-added genome: building and maintaining genomic cytosine methylation landscapes. Curr. Opin. Genet. Dev. 14: 686-691. http://dx.doi.org/10.1016/j.gde.2004.09.009 PMid:15531165   Richards EJ (2006). Inherited epigenetic variation - revisiting soft inheritance. Nat. Rev. Genet. 7: 395-401. http://dx.doi.org/10.1038/nrg1834 PMid:16534512   Roosens NH, Thu TT, Iskandar HM and Jacobs M (1998). Isolation of the ornithine-delta-aminotransferase cDNA and effect of salt stress on its expression in Arabidopsis thaliana. Plant Physiol. 117: 263-271. http://dx.doi.org/10.1104/pp.117.1.263 PMid:9576796 PMCid:35011   Saradhi PP, Alia, Arora S and Prasad KV (1995). Proline accumulates in plants exposed to UV radiation and protects them against UV induced peroxidation. Biochem. Biophys. Res. Commun. 209: 1-5. http://dx.doi.org/10.1006/bbrc.1995.1461 PMid:7726821   Siripornadulsil S, Traina S, Verma DP and Sayre RT (2002). Molecular mechanisms of proline-mediated tolerance to toxic heavy metals in transgenic microalgae. Plant Cell 14: 2837-2847. http://dx.doi.org/10.1105/tpc.004853 PMid:12417705 PMCid:152731   Tariq M and Paszkowski J (2004). DNA and histone methylation in plants. Trends Genet. 20: 244-251. http://dx.doi.org/10.1016/j.tig.2004.04.005 PMid:15145577   Verbruggen N and Hermans C (2008). Proline accumulation in plants: a review. Amino Acids 35: 753-759. http://dx.doi.org/10.1007/s00726-008-0061-6 PMid:18379856   Verbruggen N, Hua XJ, May M and Van Montagu M (1996). Environmental and developmental signals modulate proline homeostasis: evidence for a negative transcriptional regulator. Proc. Natl. Acad. Sci. U. S. A. 93: 8787-8791. http://dx.doi.org/10.1073/pnas.93.16.8787 PMid:8710950 PMCid:38752   Verslues PE and Sharma S (2010). Proline metabolism and its implications for plant-environment interaction. Arabidopsis Book 8: e0140. PMid:22303265 PMCid:3244962   Zang A, Xu X, Neill S and Cai W (2010). Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress. J. Exp. Bot. 61: 777-789. http://dx.doi.org/10.1093/jxb/erp341 PMid:20018899 PMCid:2814108