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S. Riaz, Sadia, B., Awan, F. S., Khan, I. A., Sadaqat, H. A., and Khan, I. A., Development of a species-specific sequence-characterized amplified region marker for roses, vol. 11, pp. 440-447, 2012.
Boudichevskaia A, Flachowsky H, Peil A, Fisher C, et al. (2006). Development of a multiallelic SCAR marker for the scab resistance gene Vr1/Vh4/Vx from R12740-7A apple and its utility for molecular breeding. Tree Genet. 2: 186-195. Boukar O, Kong L, Singh BB, Murdock L, et al. (2004). AFLP and AFLP-derived SCAR markers associated with Striga gesnerioides resistance in cowpea. Crop Sci. 44: 1259-1264. de Varies DP and Dubois AM (1996). Rose breeding: past, present prospects. Second International Symposium on Roses, Antibes, France, February 20-24, 1995. Acta Horticult. 424: 241-248. Deputy JC, Ming R, Ma H, Liu Z, et al. (2002). Molecular markers for sex determination in papaya (Carica papaya L.). Theor. Appl. Genet. 106: 107-111. PMid:12582877 Devereux J, Haeberli P and Smithies O (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12: 387-395. PMid:6546423    PMCid:321012 Ellsworth DL, Rittenhouse KD and Honeycutt RL (1993). Artifactual variation in randomly amplified polymorphic DNA banding patterns. Biotechniques 14: 214-217. PMid:8431284 Esselink GD, Smulders MJ and Vosman B (2003). Identification of cut rose (Rosa hybrida) and rootstock varieties using robust sequence tagged microsatellite site markers. Theor. Appl. Genet. 106: 277-286. PMid:12582853 Gudin S (2000). Rose: genetics and breeding. Avenue Escadrille Normandie-Neimen, 13397 Marseille, Cedex 20, France. Plant Breed. Rev. 8: 159-189. Hernandez P, Martin A and Dorado G (1999). Development of SCARs by direct sequencing of RAPD products: a practical tool for the introgression and marker-assisted selection of wheat. Mol. Breed. 5: 245-253. Hernández P, Rosa de la R, Rallo L, Martín A, et al. (2001). First evidence of a retrotransposon-like element in (Olea europeae): implications in plant variety identification by SCAR-marker development. Theor. Appl. Genet. 102: 1082-1087. Heun M, Murphy JP and Phillips TD (1994). A comparison of RAPD and isoenzyme analysis for determining the genetic relationships among Avena sterilis L. accessions. Theor. Appl. Genet. 87: 689-696. Kaul K, Karthigeyan S, Dhyani D, Kaur N, et al. (2009). Morphological and molecular analyses of Rosa damascena x Rosa bourboniana interspecific hybrids. Sci. Horticult. 122: 258-263. Kaur N, Sharma RK, Sharma M, Singh V, et al. (2007). Molecular evaluation and micropropagation of field selected elites of R. damascena. Gen. Appl. Plant Physiol. 33: 171-186. Khan IA, Awan FS, Ahmed A and Khan AA (2004). A modified mini-prep method for economical and rapid extraction of genomic DNA in plants. Plant Mol. Biol. Rep. 22: 89. Khan IA, Yong BiF, Ahmad A, Awan FS, et al. (2005). Genetic diversity of Pakistan wheat germplasm as revealed by RAPD markers. Genet. Res. Crop Evol. 52: 239-244. Kiani M, Zamani Z, Khalighi A, Fatahi R, et al. (2008). Wide genetic diversity of Rosa damascena Mill. Germplasm in Iran as revealed by RAPD analysis. Sci. Horticult. 115: 386-392. Kohel RJ, Yu J, Park YH and Lazo GR (2001). Molecular mapping and characterization of traits controlling fiber quality in cotton. Euphytica 121: 163-172. Masuzaki S, Yaguchi S, Yamauchi N and Shigyo M (2007). Morphological characterization of Allium multiple alien addition lines reveals chromosomal locations of gene(s) related to bulb formation in Allium cepa. J. Sci. Horticult. Biotech. 82: 393-396. Meunier JR and Grimont PA (1993). Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Res. Microbiol. 144: 373-379. Mohapatra A and Rout GR (2005). Identification and analysis of genetic variation among rose cultivars using random amplified polymorphic DNA. Z. Naturforsch. C. 60: 611-617. PMid:16163838 Moretzsohn MC, Nunes CDM, Ferreira ME and Grattapaglia D (2000). RAPD linkage mapping of the shell thickness locus in oil palm (Elaeis guineensis Jacq.). Theor. Appl. Genet. 100: 63-70. Paran I and Michelmore RW (1993). Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet. 85: 985-993. Piquemal J, Cinquin E, Couton F, Rondeau C, et al. (2005). Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor. Appl. Genet. 111: 1514-1523. PMid:16187118 Rahman M, Hussain D and Zafar Y (2002). Estimation of genetic divergence among elite cotton (Gossypium hirsutum L.) cultivars/genotypes by DNA fingerprinting technology. Crop Sci. 42: 2137-2144. Rajapakse S (2003). Gene Mapping. In: Encyclopedia of Rose Sciences (Roberts A, Debener T and Gudin S, eds.). Elsevier, Oxford, 326-334. Rehder A (1940). Manual of Cultivated Trees and Shrubs. Extraction with Volatile Solvents. MacMillan, Robiquest, C. 1835, New York. J. Pharm. 21: 335-336. Rugienius R, Siksnianas T, Stanys V, Gelvonauskiene D, et al. (2006). Use of RAPD and SCAR markers for identification of strawberry genotypes carrying red stele (Phytophtora fragariae) resistance gene Rpf1. Agron. Res. 4: 335-339. Sadia A (2007). Genetic Diversity in Rose Based on RAPD Analysis. MSc. Dissertation thesis, University of Agriculture, Faisalabad, Pakistan. Saiki RK (1989). The Design and Optimization of the PCR. In: PCR Technology - Principles and Applications for DNA Amplification (Erlich HA, ed.). Stockton Press, New York, 7-16. Schierwater B and Ender A (1993). Different thermostable DNA polymerases may amplify different RAPD products. Nucleic Acids Res. 21: 4647-4648. PMid:8233808    PMCid:311208 Shimada N, Nakatsuka T, Kakizaki Y, Abe Y, et al. (2008). Identification of gentian cultivars using SCAR markers based on intron-length polymorphisms of flavinoid biosynthetic genes. Sci. Horticult. 119: 292-296. Summer H, Gramer R and Droge P (2009). Denaturing urea polyacrylamide gel electrophoresis (Urea PAGE). J. Vis. Exp. 10: 1485-3791. Upadhya A, Jayadev K, Manimekalai R and Parthasarathy VA (2004). Genetic relationship and diversity in Indian account accessions based on RAPD markers. Sci. Horticult. 99: 353-362. Weising K, Nybom H, Wolf K and Gunter K (2005). DNA Fingerprinting in Plants, Principle, Methods and Applications. 2nd edn. CRC Press, Boca Raton. Wen XP and Pang XX (2004). Characterization of genetic relationships of Rosa roxburghii Tratt and its relatives using morphological traits, RAPD and AFLP markers. Sci. Horticult. 79: 189-196. Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. PMid:1979162    PMCid:332606 Yan Z, Denneboom C, Hattendorf A, Dolstra O, et al. (2005). Construction of an integrated map of rose with AFLP, SSR, PK, RGA, RFLP, SCAR and morphological markers. Theor. Appl. Genet. 110: 766-777. PMid:15672277
S. Ijaz, Rana, I. A., Khan, I. A., and Saleem, M., Establishment of an in vitro regeneration system for genetic transformation of selected sugarcane genotypes, vol. 11, pp. 512-530, 2012.
Alam R, Mannan SA, Karim Z and Amin MN (2003). Regeneration of sugarcane (Saccharum officinarum L.) Plantlet from callus. Pak. Sugar J. 18: 15-19. Ali K and Afghan S (2001). Rapid multiplication of sugarcane through micropropagation technique. Pak. Sugar J. 16: 11-14. Anbalagan S, Kalmani A and Sakila M (2000). In vitro propagation of sugarcane: nature of callus, direct regeneration, regeneration through callus and morphological variations. Res. Crops 2: 138-140. Arencibia A, Molina PR, de la Riva G and Selman-Housein G (1995). Production of transgenic sugarcane (Saccharum officinarum L.) plants by intact cell electroporation. Plant Cell Rep. 14: 305-309. Ather A, Khan S, Rehman A and Nazir M (2009). Optimization of the protocols for callus induction, regeneration and acclimatization of sugarcane cv. Thatta-10. Pak. J. Bot. 41: 815-820. Barba R and Nickell LG (1969). Nutrition and organ differentiation in tissue cultures of sugarcane, a monocotyledon. Planta 89: 299-302. Behera KK and Sahoo S (2009). Rapid in vitro micropropagation of sugarcane (Saccharum officinarum L. cv.-Nayana) through callus culture. Nat. Sci. 7: 1545-0740. Brisibe EA, Miyake H, Taniguchi T and Maeda E (1994). Regulation of somatic embryogenesis in long-term callus cultures of sugarcane (Saccharum officinarum L.). New Phytol. 126: 301-307. Cassells AC and Jones PW (1995). The Methodology of Plant Gene Manipulation. Criteria for Decision Making. Kluwer, Dordrecht, 124-129. Cheong EJ, Mock R and Li R (2009). Optimizing culture medium for meristem tissue culture of several Saccharum species and commercial hybrids. J. Am. Soc. Sugar Cane Technol. 29: 149-165. Chowdhury MKU and Vasil IK (1993). Molecular analysis of plants regenerated from embryogenic cultures of hybrid sugarcane cultivars (Saccharum spp.). Theor. Appl. Genet. 86: 181-188. Cloutier S and Landry BS (1994). Molecular markers applied to plant tissue culture. In Vitro Cell. Dev. Biol. 30: 32-39. Daniels J and Roach BT (1987). Taxonomy and Evolution. In: Sugarcane Improvement Through Breeding (Heinz DJ, ed.). Elsevier, Amsterdam, 7-84. Devarumath RM, Doule RB, Kawar PG, Naikebawane SB, et al. (2007). Field performance and RAPD analysis to evaluate genetic fidelity of tissue culture raised plants vis-à-vis conventional setts derived plants of sugarcane. Sugar Tech 9: 17-22. Ellis J, Dodds P and Pryor T (2000). The generation of plant disease resistance gene specificities. Trends Plant Sci. 5: 373-379. Escalona M, Castillo R, Concepcion O, Barroto CG, et al. (1995). Influence of two callus types on the establishment of cell suspensions in sugarcane (Sacchrum spp.). Centro Agricola 22: 63-70. Falco MC, Tulmann Neto A and Ulian EC (2000). Transformation and expression of a gene for herbicide resistance in Brazilian sugarcane. Plant Cell Rep. 19: 1188-1194. Fitch MMM and Moore PH (1990). Comparison of 2,4-D and picloram for selection of long-term totipotent green callus cultures of sugarcane. Plant Cell Tiss. Org. Cult. 20: 157-163. Franklin G, Arvinth S, Sheeba CJ, Kanchana M, et al. (2006). Auxin pretreatment promotes regeneration of sugarcane (Saccharum spp. hybrids) midrib segment explants. Plant Growth Regul. 50: 111-119. Geijskes RJ, Wang LF, Lakshmanan P, McKeon MG, et al. (2003). Smartsette seedlings: tissue culture seed plants for the Australian sugar industry. Sugarcane Int. May/June 13-17. Gill NK, Raman G and Gosal SS (2004). Factor enhancing somatic embryogenesis and plant regeneration sugarcane (Saccharum officinarum L.). Ind. J. Biotechnol. 3: 119-123. Gonzalez-Morejon A, Ojito MC, Perez-Ponce J and Castellanos-Morales E (1988). Effect of high concentrations in vitro tissue culture in sugar cane (Saccharum spp.). Centro Agricola 15: 12-18. Heinz DJ and Mee GWP (1969). Plant differentiation from callus tissue of Saccharum species. Crop Sci. 9: 346-348. 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Keating BA and Wilson JR (1997). Intensive Sugarcane Production: Meeting the Challenge Beyond 2000. CAB International, Wallingford. Kharinarain RP, Dolgikh VI and Guzhov YL (1996). Selection of media for mass regeneration of sugarcane plants from callus culture. Russ. J. Plant Physiol. 43: 97-100. Larkin P and Scowcroft WR (1981). Somaclonal variation - a novel source of variability from cell cultures for plant improvement. Theor. Appl. Genet. 60: 197-214. Liu MC (1981). In vitro Methods Applied to Sugarcane Improvement. In: Plant Tissue Culture: Methods and Applications in Agriculture (Thorpe TA, ed.). Academic Press, New York, 299-323. Manickavasagam M and Ganapathi A (1998). Direct somatic embryogenesis and plant regeneration from leaf explants of sugarcane. Ind. J. Exp. Biol. 36: 832-835. Palotta MA, Graham RD, Langridge P, Sparrow DHB, et al. (2000). RFLP mapping of manganese efficiency in barley. Theor. Appl. Genet. 101: 1100-1108. Popelka JC and Altpeter F (2003). Evaluation of rye (Secale cereale L.) inbred lines and their crosses for tissue culture response and stable genetic transformation of homozygous rye inbred line L22 by biolistic gene transfer. Theor. Appl. Genet. 107: 583-590. PMid:12830384 Ramanand KN, Subhanand N, Lal M and Sing SB (2005). Plantlet regeneration through leaf callus culture in sugarcane. Sugar Tech 8: 85-87. Sinha H, Gill M and Gosal S (2000). Regulation of somatic embryogenesis and plant regeneration in sugarcane (Saccharum officinarum L.). Indian J. Agri. Sci. 70: 181-183. Sweby DL, Huckett BI and Botha FC (1994). Minimizing somaclones variation in tissue cultures of sugarcane. Afr. Sugar. Technol. Ass. 68: 46-50. Taylor PWJ, Geijskes JR, Ko HL, Fraser TA, et al. (1995). Sensitivity of random amplified polymorphic DNA analysis to detect genetic change in sugarcane during tissue culture. Theor. Appl. Genet. 90: 1169-1173. Villalobos I (1987). Induccion y multipucacion de callos in vitro en tres cultivares comerciales de cana de azucar (Saccharnm spp.). Agron. Costarricense 11: 39-44.
R. M. Rana, Khan, S. H., Ali, Z., Khan, A. I., and Khan, I. A., Elucidation of thermotolerance diversity in cotton (Gossypium hirsutum L.) using physio-molecular approaches, vol. 10, pp. 1156-1167, 2011.
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A. I. Khan, Khan, I. A., Awan, F. S., Sadaqat, H. A., and Bahadur, S., Estimation of genetic distance based on RAPDs between 11 cotton accessions varying in heat tolerance, vol. 10, pp. 96-101, 2011.
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