Publications
Found 7 results
Filters: Author is X.X. Yang [Clear All Filters]
, ,
“Associations between INSR and MTOR polymorphisms in type 2 diabetes mellitus and diabetic nephropathy in a Northeast Chinese Han population”, vol. 14, pp. 1808-1818, 2015.
, “Genetic linkage map of Cucurbita maxima with molecular and morphological markers”, vol. 14. pp. 5480-5484, 2015.
, “Quantitative trait locus analysis of grape weight and soluble solid content”, vol. 14, pp. 9872-9881, 2015.
, “Association of MHC class-III gene polymorphisms with ER-positive breast cancer in Chinese Han population”, vol. 11, pp. 4299-4306, 2012.
, Anderson WF, Chu KC, Chatterjee N, Brawley O, et al. (2001). Tumor variants by hormone receptor expression in white patients with node-negative breast cancer from the surveillance, epidemiology, and end results database. J. Clin. Oncol. 19: 18-27.
PMid:11134191
Baccar HA, Yacoubi LB, Troudi W, Hmida S, et al. (2006). HLA class II polymorphism: protective or risk factors to breast cancer in Tunisia? Pathol. Oncol. Res. 12: 79-81.
http://dx.doi.org/10.1007/BF02893448
Bhutia SK, Mallick SK and Maiti TK (2010). Tumour escape mechanisms and their therapeutic implications in combination tumour therapy. Cell Biol. Int. 34: 553-563.
http://dx.doi.org/10.1042/CBI20090206
PMid:20384587
Cantú de León D, Perez-Montiel D, Villavicencio V, Garcia CA, et al. (2009). High resolution human leukocyte antigen (HLA) class I and class II allele typing in Mexican mestizo women with sporadic breast cancer: case-control study. BMC Cancer 9: 48.
http://dx.doi.org/10.1186/1471-2407-9-48
PMid:19196481 PMCid:2653544
de Jong MM, Nolte IM, de Vries EG, Schaapveld M, et al. (2003). The HLA class III subregion is responsible for an increased breast cancer risk. Hum. Mol. Genet. 12: 2311-2319.
http://dx.doi.org/10.1093/hmg/ddg245
PMid:12915440
Dunn GP, Bruce AT, Ikeda H, Old LJ, et al. (2002). Cancer immunoediting: from immunosurveillance to tumor escape. Nat. Immunol. 3: 991-998.
http://dx.doi.org/10.1038/ni1102-991
PMid:12407406
Dunnwald LK, Rossing MA and Li CI (2007). Hormone receptor status, tumor characteristics, and prognosis: a prospective cohort of breast cancer patients. Breast Cancer Res. 9: R6.
http://dx.doi.org/10.1186/bcr1639
PMid:17239243 PMCid:1851385
Ghaderi A, Talei A, Gharesi-Fard B, Farjadian SH, et al. (2001). HLA-DBR 1 alleles and the susceptibility of Iranian patients with breast cancer. Pathol. Oncol. Res. 7: 39-41.
http://dx.doi.org/10.1007/BF03032603
PMid:11349219
Gruen JR and Weissman SM (2001). Human MHC class III and IV genes and disease associations. Front Biosci. 6: D960-D972.
http://dx.doi.org/10.2741/Gruen
PMid:11487469
Gun FD, Ozturk OG, Polat A and Polat G (2012). HLA class-II allele frequencies in Turkish breast cancer patients. Med. Oncol. 29: 466-471.
http://dx.doi.org/10.1007/s12032-011-9873-4
PMid:21373933
Hashimoto M, Nakamura N, Obayashi H, Kimura F, et al. (1999). Genetic contribution of the BAT2 gene microsatellite polymorphism to the age-at-onset of insulin-dependent diabetes mellitus. Hum. Genet. 105: 197-199.
http://dx.doi.org/10.1007/s004390051089
PMid:10987645
Iris FJ, Bougueleret L, Prieur S, Caterina D, et al. (1993). Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment. Nat. Genet. 3: 137-145.
http://dx.doi.org/10.1038/ng0293-137
PMid:8499947
Jemal A, Bray F, Center MM, Ferlay J, et al. (2011). Global cancer statistics. CA Cancer J. Clin. 61: 69-90.
http://dx.doi.org/10.3322/caac.20107
PMid:21296855
Lavado R, Benavides M, Villar E, Ales I, et al. (2005). The HLA-B7 allele confers susceptibility to breast cancer in Spanish women. Immunol. Lett. 101: 223-225.
http://dx.doi.org/10.1016/j.imlet.2005.03.006
PMid:16188571
Linos E, Spanos D, Rosner BA, Linos K, et al. (2008). Effects of reproductive and demographic changes on breast cancer incidence in China: a modeling analysis. J. Natl. Cancer Inst. 100: 1352-1360.
http://dx.doi.org/10.1093/jnci/djn305
PMid:18812552 PMCid:2556703
Mahmoodi M, Nahvi H, Mahmoudi M, Kasaian A, et al. (2012). HLA-DRB1, -DQA1 and -DQB1 allele and haplotype frequencies in female patients with early onset breast cancer. Pathol. Oncol. Res. 18: 49-55.
http://dx.doi.org/10.1007/s12253-011-9415-6
PMid:21720852
Mestiri S, Bouaouina N, Ahmed SB, Khedhaier A, et al. (2001). Genetic variation in the tumor necrosis factor-alpha promoter region and in the stress protein hsp70-2: susceptibility and prognostic implications in breast carcinoma. Cancer 91: 672-678.
http://dx.doi.org/10.1002/1097-0142(20010215)91:4<672::AID-CNCR1050>3.0.CO;2-J
Milner CM and Campbell RD (2001). Genetic organization of the human MHC class III region. Front Biosci. 6: D914-D926.
http://dx.doi.org/10.2741/Milner
PMid:11487476
Shiina T, Inoko H and Kulski JK (2004). An update of the HLA genomic region, locus information and disease associations: 2004. Tissue Antigens 64: 631-649.
http://dx.doi.org/10.1111/j.1399-0039.2004.00327.x
PMid:15546336
Singal DP, Li J and Zhu Y (2000). HLA class III region and susceptibility to rheumatoid arthritis. Clin. Exp. Rheumatol. 18: 485-491.
PMid:10949724
Spies T, Blanck G, Bresnahan M, Sands J, et al. (1989). A new cluster of genes within the human major histocompatibility complex. Science 243: 214-217.
http://dx.doi.org/10.1126/science.2911734
PMid:2911734
Xie T, Rowen L, Aguado B, Ahearn ME, et al. (2003). Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. Genome Res. 13: 2621-2636.
http://dx.doi.org/10.1101/gr.1736803
PMid:14656967 PMCid:403804
Yu CY (1998). Molecular genetics of the human MHC complement gene cluster. Exp. Clin. Immunogenet. 15: 213-230.
http://dx.doi.org/10.1159/000019075
PMid:10072631
Ziegler RG, Anderson WF and Gail MH (2008). Increasing breast cancer incidence in China: the numbers add up. J. Natl. Cancer Inst. 100: 1339-1341.
http://dx.doi.org/10.1093/jnci/djn330
PMid:18812546
“Selection pressures have driven population differentiation of domesticated and wild common carp (Cyprinus carpio L.)”, vol. 11, pp. 3222-3235, 2012.
,
Appio KT and Weber LI (2007). Temporal genetic differentiation in cultured and natural beds of the brown mussel Perna perna (Mytilidae). Genet. Mol. Res. 6: 127-136.
PMid:17469062
Aung O, Nguyen TTT, Poompuang S and Kamonrat W (2010). Microsatellite DNA markers revealed genetic population structure among captive stocks and wild populations of mrigal, Cirrhinus cirrhosus in Myanmar. Aquaculture 299: 37-43.
http://dx.doi.org/10.1016/j.aquaculture.2009.12.010
Balon E (1995). Origin and domestication of the wild carp, Cyprinus carpio: from Roman gourmets to the swimming flowers. Aquaculture 129: 3-48.
http://dx.doi.org/10.1016/0044-8486(94)00227-F
Barker JSF, Frydenberg J, González J, Davies HI, et al. (2009). Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii. Heredity 102: 389-401.
http://dx.doi.org/10.1038/hdy.2008.127
PMid:19142202
Bazin E, Glemin S and Galtier N (2006). Population size does not influence mitochondrial genetic diversity in animals. Science 312: 570-572.
http://dx.doi.org/10.1126/science.1122033
PMid:16645093
Beaumont MA and Nichols RA (1996). Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B 263: 1619-1626.
http://dx.doi.org/10.1098/rspb.1996.0237
Beaumont MA and Balding DJ (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980.
http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x
PMid:15012769
Carlson SM, Edeline E, Asbjorn VL, Haugen TO, et al. (2007). Four decades of opposing natural and human-induced artificial selection acting on Windermere pike (Esox lucius). Ecol. Lett. 10: 512-521.
http://dx.doi.org/10.1111/j.1461-0248.2007.01046.x
PMid:17498150
Cheng Y, Wakefield M, Siddle HV, Coggill PC, et al. (2009). Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii). Mol. Ecol. Resour. 9: 346-349.
http://dx.doi.org/10.1111/j.1755-0998.2008.02401.x
PMid:21564646
Chistiakov DA and Voronova NV (2009). Genetic evolution and diversity of common carp Cyprinus carpio L. Cent. Eur. J. Biol. 4: 304-312.
http://dx.doi.org/10.2478/s11535-009-0024-2
Coombs JA, Letcher BH and Nislow KH (2008). CREATE: a software to create input files from diploid genotypic data for 52 genetic software programs. Mol. Ecol. Resour. 8: 578-580.
http://dx.doi.org/10.1111/j.1471-8286.2007.02036.x
PMid:21585837
Cornuet JM and Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
PMid:8978083 PMCid:1207747
Dupanloup I, Schneider S and Excoffier L (2002). A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11: 2571-2581.
http://dx.doi.org/10.1046/j.1365-294X.2002.01650.x
PMid:12453240
Excoffier L and Lischer HEL (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10: 564-567.
http://dx.doi.org/10.1111/j.1755-0998.2010.02847.x
PMid:21565059
Excoffier L, Hofer T and Foll M (2009). Detecting loci under selection in a hierarchically structured population. Heredity 103: 285-298.
http://dx.doi.org/10.1038/hdy.2009.74
PMid:19623208
Fraser DJ, Cook AM, Eddington JD, Bentzen P, et al. (2008). Mixed evidence for reduced local adaptation in wild salmon resulting from interbreeding with escaped farmed salmon: complexities in hybrid fitness. Evol. Appl. 1: 501-512.
http://dx.doi.org/10.1111/j.1752-4571.2008.00037.x
PMCid:3352379
Galtier N, Nabholz B, Glemin S and Hurst GD (2009). Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 18: 4541-4550.
http://dx.doi.org/10.1111/j.1365-294X.2009.04380.x
PMid:19821901
Goudet J (1995). FSTAT (Version 1.2): A computer program to calculate F-statistics. J. Heredity 86: 485-486.
Hall TA (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
Hansen MM, Meier K and Mensberg KLD (2010). Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach. Mol. Ecol. 19: 1787-1800.
http://dx.doi.org/10.1111/j.1365-294X.2010.04615.x
PMid:20345684
Innan H and Kim Y (2004). Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl. Acad. Sci. U. S. A. 101: 10667-10672.
http://dx.doi.org/10.1073/pnas.0401720101
PMid:15249682 PMCid:489992
Kauer MO, Dieringer D and Schlotterer C (2003). A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165: 1137-1148.
PMid:14668371 PMCid:1462820
Kohlmann K, Kersten P and Flajšhans M (2005). Microsatellite-based genetic variability and differentiation of domesticated, wild and feral common carp (Cyprinus carpio L.) populations. Aquaculture 247: 253-266.
http://dx.doi.org/10.1016/j.aquaculture.2005.02.024
Kohlmann K, Kersten P and Flajshans M (2007). Comparison of microsatellite variability in wild and cultured tench (Tinca tinca). Aquaculture 272: S147-S151.
http://dx.doi.org/10.1016/j.aquaculture.2007.08.003
Kuhner MK and Smith LP (2007). Comparing likelihood and Bayesian coalescent estimation of population parameters. Genetics 175: 155-165.
http://dx.doi.org/10.1534/genetics.106.056457
PMid:16510781 PMCid:1775024
Li Q, Shu J, Yu RH and Tian CY (2007). Genetic variability of cultured populations of the Pacific abalone (Haliotis discus hannai Ino) in China based on microsatellites. Aquac. Res. 38: 981-990.
http://dx.doi.org/10.1111/j.1365-2109.2007.01764.x
Lind CE, Evans BS, Knauer J, Taylor JJU, et al. (2009). Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima). Aquaculture 286: 12-19.
http://dx.doi.org/10.1016/j.aquaculture.2008.09.009
Ljungqvist M, Åkesson M and Hansson B (2010). Do microsatellites reflect genome-wide genetic diversity in natural populations? Mol. Ecol. 19: 851-855.
http://dx.doi.org/10.1111/j.1365-294X.2010.04522.x
PMid:20102512
Lou YD and Sun JC (2001). Progress on studies of origin and genetic diversity of three breeds of red carp in Jiangxi province. J. Fish. China 25: 570-575.
McGinnity P, Prodohl P, Ferguson A, Hynes R, et al. (2003). Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proc. Biol. Sci. 270: 2443-2450.
http://dx.doi.org/10.1098/rspb.2003.2520
PMid:14667333 PMCid:1691531
Nei M (1987). Molecular Evolution Genetics. Columbia University Press, New York.
Nielsen R (2005). Molecular signatures of natural selection. Annu. Rev. Genet. 39: 197-218.
http://dx.doi.org/10.1146/annurev.genet.39.073003.112420
PMid:16285858
Peakall R and Smouse PE (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295.
http://dx.doi.org/10.1111/j.1471-8286.2005.01155.x
Peel D, Ovenden JR and Peel SL (2004). NeEstimator: Software for Estimating Effective Population Size. Version 1.3. Department of Primary Industries and Fisheries, Queensland Government, Brisbane.
Piry S, Luikart G and Cornuet JM (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective size using allele frequency data. J. Heredity 90: 502-503.
http://dx.doi.org/10.1093/jhered/90.4.502
Posada D (2006). Collapse: Describing Haplotypes from Sequence Alignments. In: Computational Evolutionary Biology Laboratory, University of Vigo, Vigo.
Rahman SMZ, Khan MR, Islam S and Alam S (2009). Genetic variation of wild and hatchery populations of the catla Indian major carp (Catla catla Hamilton 1822: Cypriniformes, Cyprinidae) revealed by RAPD markers. Genet. Mol. Biol. 32: 197-201.
http://dx.doi.org/10.1590/S1415-47572009005000013
PMid:21637668 PMCid:3032962
Raymond M and Rousset F (1995). GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. Heredity 86: 248-249.
Rogell B, Eklund M, Thorngren H, Laurila A, et al. (2010). The effects of selection, drift and genetic variation on life-history trait divergence among insular populations of natterjack toad, Bufo calamita. Mol. Ecol. 19: 2229-2240.
http://dx.doi.org/10.1111/j.1365-294X.2010.04642.x
PMid:20465584
Sambrook Jl and Russell DW (2001). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x
Vigouroux Y, McMullen M, Hittinger CT, Houchins K, et al. (2002). Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc. Natl. Acad. Sci. U. S. A. 99: 9650- 9655.
http://dx.doi.org/10.1073/pnas.112324299
PMid:12105270 PMCid:124964
Wang CH, Li SF, Nagy ZT, Lehoczky I, et al. (2010). Molecular genetic structure and relationship of Chinese and Hungarian common carp (Cyprinus carpio L.) strains based on mitochondrial sequence. Aquac. Res. 41: 1339-1347.
http://dx.doi.org/10.1111/j.1365-2109.2009.02422.x
Zhang JS and Sun XY (2006). Open and analysis of breeding techniques for Jian common carp. China Fish. 9: 69-72.