Publications
Found 6 results
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, “OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice”, vol. 14, pp. 9506-9517, 2015.
, “Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.)”, vol. 13, pp. 5159-5172, 2014.
, “Identification of quantitative trait loci conferring blast resistance in Bodao, a japonica rice landrace”, vol. 13, pp. 9756-9765, 2014.
, “Regulation of ATG6/Beclin-1 homologs by abiotic stresses and hormones in rice (Oryza sativa L.)”, vol. 11, pp. 3676-3687, 2012.
Cao Y and Klionsky DJ (2007). Physiological functions of Atg6/Beclin 1: a unique autophagy-related protein. Cell Res. 17: 839-849.
http://dx.doi.org/10.1038/cr.2007.78
PMid:17893711
Chen X, Gu Z, Xin D, Hao L, et al. (2011). Identification and characterization of putative CIPK genes in maize. J. Genet. Genom. 38: 77-87.
http://dx.doi.org/10.1016/j.jcg.2011.01.005
PMid:21356527
Fujiki Y, Yoshimoto K and Ohsumi Y (2007). An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 143: 1132-1139.
http://dx.doi.org/10.1104/pp.106.093864
PMid:17259285 PMCid:1820928
Gu X and Vander Velden K (2002). DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein 3687 Regulation of ATG6 homologs by abiotic stresses and hormones family. Bioinformatics 18: 500-501.
http://dx.doi.org/10.1093/bioinformatics/18.3.500
PMid:11934757
Harrison-Lowe NJ and Olsen LJ (2008). Autophagy protein 6 (ATG6) is required for pollen germination in Arabidopsis thaliana. Autophagy 4.
Hashiguchi Y, Furuta Y, Kawahara R and Nishida M (2007). Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback. Gene 396: 170-179.
http://dx.doi.org/10.1016/j.gene.2007.03.015
PMid:17467198
Horton P, Park KJ, Obayashi T and Nakai K (2006). Protein Subcellular Localization Prediction with WoLF PSORT. Citeseer.
Huang J, Wang MM, Bao YM, Sun SJ, et al. (2008). SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (Oryza sativa L.). Gene 424: 71-79.
http://dx.doi.org/10.1016/j.gene.2008.07.027
PMid:18755256
Hung KT and Kao CH (2004). Hydrogen peroxide is necessary for abscisic acid-induced senescence of rice leaves. J. Plant Physiol. 161: 1347-1357.
http://dx.doi.org/10.1016/j.jplph.2004.05.011
PMid:15658805
Jung KH, Dardick C, Bartley LE, Cao P, et al. (2008). Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One 3: e3337.
http://dx.doi.org/10.1371/journal.pone.0003337
PMid:18836531 PMCid:2556097
Kametaka S, Okano T, Ohsumi M and Ohsumi Y (1998). Apg14p and Apg6/Vps30p form a protein complex essential for autophagy in the yeast, Saccharomyces cerevisiae. J. Biol. Chem. 273: 22284-22291.
http://dx.doi.org/10.1074/jbc.273.35.22284
PMid:9712845
Liu Y, Schiff M, Czymmek K, Talloczy Z, et al. (2005). Autophagy regulates programmed cell death during the plant innate immune response. Cell 121: 567-577.
http://dx.doi.org/10.1016/j.cell.2005.03.007
PMid:15907470
Meng XB, Zhao WS, Lin RM, Wang M, et al. (2006). Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene. DNA Seq. 17: 41-48.
http://dx.doi.org/10.1080/10425170500476509
PMid:16753816
Michiorri S, Gelmetti V, Giarda E, Lombardi F, et al. (2010). The Parkinson-associated protein PINK1 interacts with Beclin1 and promotes autophagy. Cell Death. Differ. 17: 962-974.
http://dx.doi.org/10.1038/cdd.2009.200
PMid:20057503
Mochida K, Kawaura K, Shimosaka E, Kawakami N, et al. (2006). Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat. Mol. Genet. Genom. 276: 304-312.
http://dx.doi.org/10.1007/s00438-006-0120-1
PMid:16832693
Moriyasu Y and Ohsumi Y (1996). Autophagy in tobacco suspension-cultured cells in response to sucrose starvation. Plant Physiol. 111: 1233-1241.
PMid:12226358 PMCid:161001
Nielsen R and Yang Z (1998). Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936.
PMid:9539414 PMCid:1460041
Qin G, Ma Z, Zhang L, Xing S, et al. (2007). Arabidopsis AtBECLIN 1/AtAtg6/AtVps30 is essential for pollen germination and plant development. Cell Res. 17: 249-263.
PMid:17339883
Ramalingam J, Pathan MS, Feril O, Ross K, et al. (2006). Structural and functional analyses of the wheat genomes based on expressed sequence tags (ESTs) related to abiotic stresses. Genome 49: 1324-1340.
http://dx.doi.org/10.1139/g06-094
PMid:17218960
Rana RM, Dong S, Ali Z, Khan AI, et al. (2012). Identification and characterization of the Bcl-2-associated athanogene (BAG) protein family in rice. Afr. J. Biotechnol. 11: 88-99.
Sato Y and Yokoya S (2008). Enhanced tolerance to drought stress in transgenic rice plants overexpressing a small heat-shock protein, sHSP17.7. Plant Cell Rep. 27: 329-334.
http://dx.doi.org/10.1007/s00299-007-0470-0
PMid:17968552
Sinha S and Levine B (2008). The autophagy effector Beclin 1: a novel BH3-only protein. Oncogene 27 (Suppl 1): S137-S148.
http://dx.doi.org/10.1038/onc.2009.51
PMid:19641499 PMCid:2731580
Suzuki K, Kirisako T, Kamada Y, Mizushima N, et al. (2001). The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation. EMBO J. 20: 5971-5981.
http://dx.doi.org/10.1093/emboj/20.21.5971
PMid:11689437 PMCid:125692
Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
http://dx.doi.org/10.1093/molbev/msr121
PMid:21546353 PMCid:3203626
Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
http://dx.doi.org/10.1093/nar/22.22.4673
PMid:7984417 PMCid:308517
Waterhouse AM, Procter JB, Martin DM, Clamp M, et al. (2009). Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
http://dx.doi.org/10.1093/bioinformatics/btp033
PMid:19151095 PMCid:2672624
Wolfe KH, Gouy M, Yang YW, Sharp PM, et al. (1989). Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. U. S. A. 86: 6201-6205.
http://dx.doi.org/10.1073/pnas.86.16.6201
PMid:2762323 PMCid:297805
Wu S, Yu Z, Wang F, Li W, et al. (2007). Cloning, characterization, and transformation of the phosphoethanolamine N-methyltransferase gene (ZmPEAMT1) in maize (Zea mays L.). Mol. Biotechnol. 36: 102-112.
http://dx.doi.org/10.1007/s12033-007-0009-1
PMid:17914189
Xia K, Liu T, Ouyang J, Wang R, et al. (2011). Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.). DNA Res. 18: 363-377.
http://dx.doi.org/10.1093/dnares/dsr024
PMid:21795261 PMCid:3190957
Yang Z (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
http://dx.doi.org/10.1093/molbev/msm088
PMid:17483113
Yang Z and Nielsen R (2002). Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19: 908-917.
http://dx.doi.org/10.1093/oxfordjournals.molbev.a004148
PMid:12032247
Yang Z, Nielsen R, Goldman N and Pedersen AM (2000). Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.
PMid:10790415 PMCid:1461088