Found 53 results
Filters: Author is Y. Chen  [Clear All Filters]
Y. J. Luo, Gao, W. X., Li, S. Z., Huang, X. W., Chen, Y., Liu, F. Y., Huang, Q. Y., and Gao, Y. Q., Mitochondrial haplogroup D4 confers resistance and haplogroup B is a genetic risk factor for high-altitude pulmonary edema among Han Chinese, vol. 11, pp. 3658-3667, 2012.
Ahsan A, Mohd G, Norboo T, Baig MA, et al. (2006). Heterozygotes of NOS3 polymorphisms contribute to reduced nitrogen oxides in high-altitude pulmonary edema. Chest 130: 1511-1519. PMid:17099031   Alexe G, Fuku N, Bilal E, Ueno H, et al. (2007). Enrichment of longevity phenotype in mtDNA haplogroups D4b2b, D4a, and D5 in the Japanese population. Hum. Genet. 121: 347-356. PMid:17308896   Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, et al. (1999). Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat. Genet. 23: 147. PMid:10508508   Barany F (1991). Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc. Natl. Acad. Sci. U. S. A. 88: 189-193. PMid:1986365 PMCid:50775   Bartsch P, Mairbaurl H, Maggiorini M and Swenson ER (2005). Physiological aspects of high-altitude pulmonary edema. J. Appl. Physiol. 98: 1101-1110. PMid:15703168   Basnyat B and Murdoch DR (2003). High-altitude illness. Lancet 361: 1967-1974.   Bilal E, Rabadan R, Alexe G, Fuku N, et al. (2008). Mitochondrial DNA haplogroup D4a is a marker for extreme longevity in Japan. PLoS One 3: e2421. PMid:18545700 PMCid:2408726   Brandon MC, Ruiz-Pesini E, Mishmar D, Procaccio V, et al. (2009). MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences. Hum. Mutat. 30: 1-6. PMid:18566966   Burk A, Douzery EJP and Springer MS (2002). The secondary structure of mammalian mitochondrial 16S rRNA molecules: refinements based on a comparative phylogenetic approach. J. Mamm. Evol. 9: 225-252.   Castello PR, David PS, McClure T, Crook Z, et al. (2006). Mitochondrial cytochrome oxidase produces nitric oxide under hypoxic conditions: implications for oxygen sensing and hypoxic signaling in eukaryotes. Cell Metab. 3: 277-287. PMid:16581005   Chandel NS, Maltepe E, Goldwasser E, Mathieu CE, et al. (1998). Mitochondrial reactive oxygen species trigger hypoxia-induced transcription. Proc. Natl. Acad. Sci. U. S. A. 95: 11715-11720. PMid:9751731 PMCid:21706   Dada LA, Chandel NS, Ridge KM, Pedemonte C, et al. (2003). Hypoxia-induced endocytosis of Na,K-ATPase in alveolar epithelial cells is mediated by mitochondrial reactive oxygen species and PKC-zeta. J. Clin. Invest. 111: 1057-1064. PMid:12671055 PMCid:152585   Dehnert C, Berger MM, Mairbaurl H and Bartsch P (2007). High altitude pulmonary edema: a pressure-induced leak. Respir. Physiol. Neurobiol. 158: 266-273. PMid:17602898   Droma Y, Hanaoka M, Ota M, Katsuyama Y, et al. (2002). Positive association of the endothelial nitric oxide synthase gene polymorphisms with high-altitude pulmonary edema. Circulation 106: 826-830. PMid:12176955   Guo LJ, Oshida Y, Fuku N, Takeyasu T, et al. (2005). Mitochondrial genome polymorphisms associated with type-2 diabetes or obesity. Mitochondrion 5: 15-33. PMid:16060290   Hanaoka M, Droma Y, Hotta J, Matsuzawa Y, et al. (2003). Polymorphisms of the tyrosine hydroxylase gene in subjects susceptible to high-altitude pulmonary edema. Chest 123: 54-58. PMid:12527603   Hanaoka M, Droma Y, Ota M, Ito M, et al. (2009). Polymorphisms of human vascular endothelial growth factor gene in high-altitude pulmonary oedema susceptible subjects. Respirology 14: 46-52. PMid:19144048   Hochachka PW (1986). Defense strategies against hypoxia and hypothermia. Science 231: 234-241. PMid:2417316   Hotta J, Hanaoka M, Droma Y, Katsuyama Y, et al. (2004). Polymorphisms of renin-angiotensin system genes with high-altitude pulmonary edema in Japanese subjects. Chest 126: 825-830. PMid:15364762   Hultgren HN and Marticorena EA (1978). High altitude pulmonary edema. Epidemiologic observations in Peru. Chest 74: 372-376. PMid:699645   Kivisild T, Tolk HV, Parik J, Wang Y, et al. (2002). The emerging limbs and twigs of the East Asian mtDNA tree. Mol. Biol. Evol. 19: 1737-1751. PMid:12270900   Kong QP, Bandelt HJ, Sun C, Yao YG, et al. (2006). Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. Hum. Mol. Genet. 15: 2076-2086. PMid:16714301   Kwast KE, Burke PV, Staahl BT and Poyton RO (1999). Oxygen sensing in yeast: evidence for the involvement of the respiratory chain in regulating the transcription of a subset of hypoxic genes. Proc. Natl. Acad. Sci. U. S. A. 96: 5446-5451. PMid:10318903 PMCid:21879   Luo Y, Tang S, Gao W, Chen L, et al. (2010). Genotyping mitochondrial DNA single nucleotide polymorphisms by PCR ligase detection reactions. Clin. Chem. Lab. Med. 48: 475-483. PMid:20128730   Mortimer H, Patel S and Peacock AJ (2004). The genetic basis of high-altitude pulmonary oedema. Pharmacol. Ther. 101: 183-192. PMid:14761704   Nigou M, Parfait B, Clauser E and Olivier JL (1998). Detection and quantification of the A3243G mutation of mitochondrial DNA by ligation detection reaction. Mol. Cell Probes 12: 273-282. PMid:9778452   Nishigaki Y, Yamada Y, Fuku N, Matsuo H, et al. (2007). Mitochondrial haplogroup N9b is protective against myocardial infarction in Japanese males. Hum. Genet. 120: 827-836. PMid:17033820   Peacock AJ (1995). High altitude pulmonary oedema: who gets it and why? Eur. Respir. J. 8: 1819-1821. PMid:8620944   Qi Y, Niu W, Zhu T, Zhou W, et al. (2008). Synergistic effect of the genetic polymorphisms of the renin-angiotensin-aldosterone system on high-altitude pulmonary edema: a study from Qinghai-Tibet altitude. Eur. J. Epidemiol. 23: 143-152. PMid:17987391   Qi Y, Niu WQ, Zhu TC, Liu JL, et al. (2009). Genetic interaction of Hsp70 family genes polymorphisms with high-altitude pulmonary edema among Chinese railway constructors at altitudes exceeding 4000 meters. Clin. Chim. Acta 405: 17-22. PMid:19351530   Rosa A, Fonseca BV, Krug T, Manso H, et al. (2008). Mitochondrial haplogroup H1 is protective for ischemic stroke in Portuguese patients. BMC Med. Genet. 9: 57. PMid:18593462 PMCid:2492853   Sarada S, Himadri P, Mishra C, Geetali P, et al. (2008). Role of oxidative stress and NFkB in hypoxia-induced pulmonary edema. Exp. Biol. Med. 233: 1088-1098. PMid:18641050   Sartori C, Allemann Y and Scherrer U (2007). Pathogenesis of pulmonary edema: learning from high-altitude pulmonary edema. Respir. Physiol. Neurobiol. 159: 338-349. PMid:17532272   Saxena S, Kumar R, Madan T, Gupta V, et al. (2005). Association of polymorphisms in pulmonary surfactant protein A1 and A2 genes with high-altitude pulmonary edema. Chest 128: 1611-1619. PMid:16162765   Schurr TG and Wallace DC (2002). Mitochondrial DNA diversity in Southeast Asian populations. Hum. Biol. 74: 431-452. PMid:12180765   Wallace DC (2005). A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu. Rev. Genet. 39: 359-407. PMid:16285865 PMCid:2821041   Wen B, Li H, Lu D, Song X, et al. (2004). Genetic evidence supports demic diffusion of Han culture. Nature 431: 302-305. PMid:15372031   Yao YG, Kong QP, Bandelt HJ, Kivisild T, et al. (2002). Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am. J. Hum. Genet. 70: 635-651. PMid:11836649 PMCid:384943   Yoshida T and Tuder RM (2007). Pathobiology of cigarette smoke-induced chronic obstructive pulmonary disease. Physiol. Rev. 87: 1047-1082. PMid:17615396
H. Liu, Huang, Y., Du, X., Chen, Z., Zeng, X., Chen, Y., and Zhang, H., Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon, vol. 11, pp. 4695-4706, 2012.
Bulmer M (1988). Are codon usage patterns in unicellular organisms determined by selection-mutation balance? J. Mol. Biol. 1: 15-26.   Bulmer M (1991). The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907. PMid:1752426 PMCid:1204756   Carels N and Bernardi G (2000). Two classes of genes in plants. Genetics 154: 1819-1825. PMid:10747072 PMCid:1461008   Chiapello H, Lisacek F, Caboche M and Henaut A (1998). Codon usage and gene function are related in sequences of Arabidopsis thaliana. Gene 209: GC1-GC38.   De Amicis F and Marchetti S (2000). Intercodon dinucleotides affect codon choice in plant genes. Nucleic Acids Res. 28: 3339-3345. PMid:10954603 PMCid:110687   Doust A (2007). Architectural evolution and its implications for domestication in grasses. Ann. Bot. 100: 941-950. PMid:17478546 PMCid:2759198   Draper J, Mur LA, Jenkins G, Ghosh-Biswas GC, et al. (2001). Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol. 127: 1539-1555. PMid:11743099 PMCid:133562   Duret L and Mouchiroud D (1999). Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 96: 4482-4487. PMid:10200288 PMCid:16358   Eyre-Walker AC (1991). An analysis of codon usage in mammals: selection or mutation bias? J. Mol. Evol. 33: 442-449. PMid:1960741   Gupta SK, Bhattacharyya TK and Ghosh TC (2004). Synonymous codon usage in Lactococcus lactis: mutational bias versus translational selection. J. Biomol. Struct. Dyn. 21: 527-536. PMid:14692797   Hershberg R and Petrov DA (2008). Selection on codon bias. Annu. Rev. Genet. 42: 287-299. PMid:18983258   International Brachypodium Initiative (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768. PMid:20148030   Jiang Y, Deng F, Wang H and Hu Z (2008). An extensive analysis on the global codon usage pattern of baculoviruses. Arch. Virol. 153: 2273-2282. PMid:19030954   Kawabe A and Miyashita NT (2003). Patterns of codon usage bias in three dicot and four monocot plant species. Genes Genet. Syst. 78: 343-352. PMid:14676425   Liu H, He R, Zhang H, Huang Y, et al. (2010). Analysis of synonymous codon usage in Zea mays. Mol. Biol. Rep. 37: 677-684. PMid:19330534   Liu Q (2006). Analysis of codon usage pattern in the radioresistant bacterium Deinococcus radiodurans. Biosystems 85: 99-106. PMid:16431014   Liu Q and Xue Q (2005). Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species. J. Genet. 84: 55-62. PMid:15876584   Liu Q, Feng Y, Zhao X, Dong H, et al. (2004). Synonymous codon usage bias in Oryza sativa. Plant Sci. 167: 101-105.   Liu Q, Dou S, Ji Z and Xue Q (2005). Synonymous codon usage and gene function are strongly related in Oryza sativa. Biosystems 80: 123-131. PMid:15823411   Mitreva M, Wendl MC, Martin J, Wylie T, et al. (2006). Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. Genome Biol. 7: R75. PMCid:1779591   Morton BR and Wright SI (2007). Selective constraints on codon usage of nuclear genes from Arabidopsis thaliana. Mol. Biol. Evol. 24: 122-129. PMid:17021276   Mukhopadhyay P, Basak S and Ghosh TC (2007a). Synonymous codon usage in different protein secondary structural classes of human genes: implication for increased non-randomness of GC3 rich genes towards protein stability. J. Biosci. 32: 947-963. PMid:17914237   Mukhopadhyay P, Basak S and Ghosh TC (2007b). Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes. Gene 400: 71-81. PMid:17629420   Murray EE, Lotzer J and Eberle M (1989). Codon usage in plant genes. Nucleic Acids Res. 17: 477-498. PMid:2644621 PMCid:331598   Naya H, Romero H, Carels N, Zavala A, et al. (2001). Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii. FEBS Lett. 501: 127-130.   Peraldi A, Beccari G, Steed A and Nicholson P (2011). Brachypodium distachyon: a new pathosystem to study Fusarium head blight and other Fusarium diseases of wheat. BMC Plant Biol. 11: 100. PMid:21639892 PMCid:3123626   Roychoudhury S and Mukherjee D (2010). A detailed comparative analysis on the overall codon usage pattern in herpesviruses. Virus Res. 148: 31-43. PMid:19969032   Sharp PM and Li WH (1987). The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15: 1281-1295. PMid:3547335 PMCid:340524   Sharp PM, Stenico M, Peden JF and Lloyd AT (1993). Codon usage: mutational bias, translational selection, or both? Biochem. Soc. Trans. 21: 835-841. PMid:8132077   Shields DC and Sharp PM (1987). Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res. 15: 8023-8040. PMid:3118331 PMCid:306324   Shields DC, Sharp PM, Higgins DG and Wright F (1988). "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol. Biol. Evol. 5: 704-716. PMid:3146682   Stenico M, Lloyd AT and Sharp PM (1994). Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases. Nucleic Acids Res. 22: 2437-2446. PMid:8041603 PMCid:308193   Sueoka N (1988). Directional mutation pressure and neutral molecular evolution. Proc. Natl. Acad. Sci. U. S. A. 85: 2653-2657. PMid:3357886 PMCid:280056   Sueoka N and Kawanishi Y (2000). DNA G+C content of the third codon position and codon usage biases of human genes. Gene 261: 53-62.   Wang HC and Hickey DA (2007). Rapid divergence of codon usage patterns within the rice genome. BMC Evol. Biol. 7: S6. PMid:17288579 PMCid:1796615   Wright F (1990). The 'effective number of codons' used in a gene. Gene 87: 23-29.   Zhang WJ, Zhou J, Li ZF, Wang L, et al. (2007). Comparative analysis of codon usage patterns among mitochondrion, chloroplast and nuclear genes in Triticum aestivum L. J. Integr. Plant Biol. 49: 246-254.   Zhao S, Zhang Q, Chen Z, Zhao Y, et al. (2007). The factors shaping synonymous codon usage in the genome of Burkholderia mallei. J. Genet. Genomics 34: 362-372.
H. S. Zhu, Wang, Y. Y., Lin, M. W., Du, J. X., Hang, L. Q., Chen, Y., and Wang, L. F., Carnitine and carnitine orotate affect the expression of the prolactin-releasing peptide gene, vol. 10, pp. 3013-3019, 2011.
Anderson ST, Kokay IC, Lang T, Grattan DR, et al. (2003). Quantification of prolactin-releasing peptide (PrRP) mRNA expression in specific brain regions of the rat during the oestrous cycle and in lactation. Brain Res. 973: 64-73. Birkenfeld C, Kluge H and Eder K (2006). L-carnitine supplementation of sows during pregnancy improves the suckling behaviour of their offspring. Br. J. Nutr. 96: 334-342. Feng Y, Zhao H, An XF, Ma SL, et al. (2007). Expression of brain prolactin releasing peptide (PrRP) changes in the estrous cycle of female rats. Neurosci. Lett. 419: 38-42. PMid:17475403 Hinuma S, Habata Y, Fujii R, Kawamata Y, et al. (1998). A prolactin-releasing peptide in the brain. Nature 393: 272-276. PMid:9607765 Mera T, Fujihara H, Saito J, Kawasaki M, et al. (2007). Downregulation of prolactin-releasing peptide gene expression in the hypothalamus and brainstem of diabetic rats. Peptides 28: 1596-1604. PMid:17681402 Morales T and Sawchenko PE (2003). Brainstem prolactin-releasing peptide neurons are sensitive to stress and lactation. Neuroscience 121: 771-778. Nieminen ML, Nystedt J and Panula P (2003). Expression of neuropeptide FF, prolactin-releasing peptide, and the receptor UHR1/GPR10 genes during embryogenesis in the rat. Dev. Dyn. 226: 561-569. PMid:12619141 Ramanau A, Kluge H, Spilke J and Eder K (2004). Supplementation of sows with L-carnitine during pregnancy and lactation improves growth of the piglets during the suckling period through increased milk production. J. Nutr. 134: 86-92. PMid:14704298 Ramanau A, Kluge H and Eder K (2005). Effects of L-carnitine supplementation on milk production, litter gains and back-fat thickness in sows with a low energy and protein intake during lactation. Br. J. Nutr. 93: 717-721. Sun B, Nemoto H, Fujiwara K, Adachi S, et al. (2005). Nicotine stimulates prolactin-releasing peptide (PrRP) cells and non-PrRP cells in the solitary nucleus. Regul. Pept. 126: 91-96. PMid:15620420 Xiao Y, Qing WX, Lan MS and Ying CB (2006). Sodium tanshinone IIA sulfonate derived from Slavia miltiorrhiza Bunge up-regulate the expression of prolactin releasing peptide (PrRP) in the medulla oblongata in ovariectomized rats. Biochem. Pharmacol. 72: 582-587. PMid:16846593 Yano T, Iijima N, Kataoka Y, Hinuma S, et al. (2001). Developmental expression of prolactin releasing peptide in the rat brain: localization of messenger ribonucleic acid and immunoreactive neurons. Brain. Res. Dev. Brain. Res. 128: 101-111. Yao X, Wang XQ, Ma SL and Chen BY (2007). Electroacupuncture stimulates the expression of prolactin-releasing peptide (PrRP) in the medulla oblongata of ovariectomized rats. Neurosci. Lett. 411: 243-248. PMid:17084026