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“Aluminum triggers broad changes in microRNA expression in rice roots”, vol. 10, pp. 2817-2832, 2011.
, Abdel-Ghany SE and Pilon M (2008). MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis. J. Biol. Chem. 283: 15932-15945.
http://dx.doi.org/10.1074/jbc.M801406200
PMid:18408011 PMCid:3259626
Baier AC, Somers DJ and Gustafson JP (1995). Aluminium tolerance in wheat: correlating hydroponic evaluations with field and soil performances. Plant Breed. 114: 291-296.
http://dx.doi.org/10.1111/j.1439-0523.1995.tb01236.x
Bari R, Datt PB, Stitt M and Scheible WR (2006). PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141: 988-999.
http://dx.doi.org/10.1104/pp.106.079707
PMid:16679424 PMCid:1489890
Brennecke J, Stark A, Russell RB and Cohen SM (2005). Principles of microRNA-target recognition. PLoS Biol. 3: e85.
http://dx.doi.org/10.1371/journal.pbio.0030085
PMid:15723116 PMCid:1043860
Chen C, Ridzon DA, Broomer AJ, Zhou Z, et al. (2005). Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res. 33: e179.
http://dx.doi.org/10.1093/nar/gni178
PMid:16314309 PMCid:1292995
Chen Z, Zhang J, Kong J, Li S, et al. (2006). Diversity of endogenous small non-coding RNAs in Oryza sativa. Genetica 128: 21-31.
http://dx.doi.org/10.1007/s10709-005-2486-0
PMid:17028937
Ding D, Zhang L, Wang H, Liu Z, et al. (2009). Differential expression of miRNAs in response to salt stress in maize roots. Ann. Bot. 103: 29-38.
http://dx.doi.org/10.1093/aob/mcn205
PMid:18952624 PMCid:2707283
Fukuda T, Saito A, Wasaki J, Shinano T, et al. (2007). Metabolic alterations proposed by proteome in rice roots grown under low P and high Al concentration under low pH. Plant Sci. 172: 1157-1165.
http://dx.doi.org/10.1016/j.plantsci.2007.02.020
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, et al. (2006). miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 34: D140-D144.
http://dx.doi.org/10.1093/nar/gkj112
PMid:16381832 PMCid:1347474
Grotz N and Guerinot ML (2002). Limiting nutrients: an old problem with new solutions? Curr. Opin. Plant Biol. 5: 158-163.
http://dx.doi.org/10.1016/S1369-5266(02)00247-9
Huang CF, Yamaji N and Ma JF (2010). Knockout of a bacterial-type ATP-binding cassette transporter gene, AtSTAR1, results in increased aluminum sensitivity in Arabidopsis. Plant Physiol. 153: 1669-1677.
http://dx.doi.org/10.1104/pp.110.155028
PMid:20498340 PMCid:2923911
Huang SQ, Xiang AL, Che LL, Chen S, et al. (2010). A set of miRNAs from Brassica napus in response to sulphate deficiency and cadmium stress. Plant Biotechnol. J 8: 887-899.
http://dx.doi.org/10.1111/j.1467-7652.2010.00517.x
PMid:20444207
Jung HJ and Kang H (2007). Expression and functional analyses of microRNA417 in Arabidopsis thaliana under stress conditions. Plant Physiol. Biochem. 45: 805-811.
http://dx.doi.org/10.1016/j.plaphy.2007.07.015
PMid:17845858
Khan MS, Tawaraya K, Sekimoto H, Koyama H, et al. (2009). Relative abundance of Delta(5)-sterols in plasma membrane lipids of root-tip cells correlates with aluminum tolerance of rice. Physiol. Plant 135: 73-83.
http://dx.doi.org/10.1111/j.1399-3054.2008.01175.x
PMid:19121101
Kikui S, Sasaki T, Maekawa M, Miyao A, et al. (2005). Physiological and genetic analyses of aluminium tolerance in rice, focusing on root growth during germination. J. Inorg. Biochem. 99: 1837-1844.
http://dx.doi.org/10.1016/j.jinorgbio.2005.06.031
PMid:16095709
Li YF, Zheng Y, Addo-Quaye C, Zhang L, et al. (2010). Transcriptome-wide identification of microRNA targets in rice. Plant J. 62: 742-759.
http://dx.doi.org/10.1111/j.1365-313X.2010.04187.x
PMid:20202174
Liang G, Yang F and Yu D (2010). MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana. Plant J. 62: 1046-1057.
PMid:20374528
Lindow M, Jacobsen A, Nygaard S, Mang Y, et al. (2007). Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants. PLoS Comput. Biol. 3: e238.
http://dx.doi.org/10.1371/journal.pcbi.0030238
PMid:18052543 PMCid:2098865
Livak KJ and Schmittgen TD (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
Lu XY and Huang XL (2008). Plant miRNAs and abiotic stress responses. Biochem. Biophys. Res. Commun. 368: 458-462.
http://dx.doi.org/10.1016/j.bbrc.2008.02.007
PMid:18267107
Maron LG, Kirst M, Mao C, Milner MJ, et al. (2008). Transcriptional profiling of aluminum toxicity and tolerance responses in maize roots. New Phytol. 179: 116-128.
http://dx.doi.org/10.1111/j.1469-8137.2008.02440.x
PMid:18399934
Millar AA and Gubler F (2005). The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. Plant Cell 17: 705-721.
http://dx.doi.org/10.1105/tpc.104.027920
PMid:15722475 PMCid:1069693
Nagasaki H, Itoh J, Hayashi K, Hibara K, et al. (2007). The small interfering RNA production pathway is required for shoot meristem initiation in rice. Proc. Natl. Acad. Sci. U. S. A. 104: 14867-14871.
http://dx.doi.org/10.1073/pnas.0704339104
PMid:17804793 PMCid:1976227
Navarro L, Dunoyer P, Jay F, Arnold B, et al. (2006). A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312: 436-439.
http://dx.doi.org/10.1126/science.1126088
PMid:16627744
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, et al. (2002). MicroRNAs in plants. Genes Dev. 16: 1616-1626.
http://dx.doi.org/10.1101/gad.1004402
Sharma P and Dubey RS (2007). Involvement of oxidative stress and role of antioxidative defense system in growing rice seedlings exposed to toxic concentrations of aluminum. Plant Cell Rep. 26: 2027-2038.
http://dx.doi.org/10.1007/s00299-007-0416-6
PMid:17653721
Stirnberg P, Furner IJ and Ottoline Leyser HM (2007). MAX2 participates in an SCF complex which acts locally at the node to suppress shoot branching. Plant J. 50: 80-94.
http://dx.doi.org/10.1111/j.1365-313X.2007.03032.x
PMid:17346265
Sunkar R (2010). MicroRNAs with macro-effects on plant stress responses. Semin. Cell Dev. Biol. 21: 805-811.
http://dx.doi.org/10.1016/j.semcdb.2010.04.001
Vanzin GF, Madson M, Carpita NC, Raikhel NV, et al. (2002). The mur2 mutant of Arabidopsis thaliana lacks fucosylated xyloglucan because of a lesion in fucosyltransferase AtFUT1. Proc. Natl. Acad. Sci. U. S. A. 99: 3340-3345.
http://dx.doi.org/10.1073/pnas.052450699
PMid:11854459 PMCid:122520
Xie Q, Frugis G, Colgan D and Chua NH (2000). Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 14: 3024-3036.
http://dx.doi.org/10.1101/gad.852200
Xie Z, Khanna K and Ruan S (2010). Expression of microRNAs and its regulation in plants. Semin. Cell Dev. Biol. 21: 790-797.
http://dx.doi.org/10.1016/j.semcdb.2010.03.012
Xue LJ, Zhang JJ and Xue HW (2009). Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res. 37: 916-930.
http://dx.doi.org/10.1093/nar/gkn998
PMid:19103661 PMCid:2647296
Yamaji N, Huang CF, Nagao S, Yano M, et al. (2009). A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice. Plant Cell 21: 3339-3349.
http://dx.doi.org/10.1105/tpc.109.070771
PMid:19880795 PMCid:2782276
Yang Q, Wang Y, Zhang J, Shi W, et al. (2007). Identification of aluminum-responsive proteins in rice roots by a proteomic approach: cysteine synthase as a key player in Al response. Proteomics. 7: 737-749.
http://dx.doi.org/10.1002/pmic.200600703
PMid:17295357
Zhang Y (2005). miRU: an automated plant miRNA target prediction server. Nucleic Acids Res. 33: W701-W704.
http://dx.doi.org/10.1093/nar/gki383
PMid:15980567 PMCid:1160144
Zhang Z, Yu J, Li D, Zhang Z, et al. (2010). PMRD: plant microRNA database. Nucleic Acids Res. 38: D806-D813.
http://dx.doi.org/10.1093/nar/gkp818
PMid:19808935 PMCid:2808885
Zhao B, Liang R, Ge L, Li W, et al. (2007). Identification of drought-induced microRNAs in rice. Biochem. Biophys. Res. Commun. 354: 585-590.
http://dx.doi.org/10.1016/j.bbrc.2007.01.022
PMid:17254555
Zhao B, Ge L, Liang R, Li W, et al. (2009). Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. BMC Mol. Biol. 10: 29.
http://dx.doi.org/10.1186/1471-2199-10-29
PMid:19351418 PMCid:2670843
Zhu QH and Helliwell CA (2011). Regulation of flowering time and floral patterning by miR172. J. Exp. Bot. 62: 487-495.
http://dx.doi.org/10.1093/jxb/erq295
PMid:20952628