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2013
J. F. Wen, Huo, J. L., Chen, H. X., Ma, C. H., Jiang, H., Zhu, H. S., Zhou, H., and Deng, M. H., Cloning and bioinformatic analysis of full-length novel pepper (Capsicum annuum) genes TAF10 and TAF13, vol. 12, pp. 6947-6956, 2013.
M. H. Deng, Huo, J. L., Zhu, H. S., Zhou, H., and Wen, J. F., Molecular cloning and tissue expression analyses of two novel pepper genes: heterotrimeric G protein beta 2 subunit and ArcA1, vol. 12, pp. 1223-1231, 2013.
Arnold K, Bordoli L, Kopp J and Schwede T (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201. http://dx.doi.org/10.1093/bioinformatics/bti770 PMid:16301204   Bassi MT, Ramesar RS, Caciotti B, Winship IM, et al. (1999). X-linked late-onset sensorineural deafness caused by a deletion involving OA1 and a novel gene containing WD-40 repeats. Am. J. Hum. Genet. 64: 1604-1616. http://dx.doi.org/10.1086/302408 PMid:10330347 PMCid:1377903   Bendtsen JD, Nielsen H, von Heijne G and Brunak S (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340: 783-795. http://dx.doi.org/10.1016/j.jmb.2004.05.028 PMid:15223320   Deng M-H, Wen J-F, Huo J-L, Zhu H-S, et al. (2011). Relationship of metabolism of reactive oxygen species with cytoplasmic male sterility in pepper (Capsicum annuum L.). Sci. Hortic. 134: 232-236. http://dx.doi.org/10.1016/j.scienta.2011.10.027   Deng W, Tan Y, Wang X, Xi D, et al. (2009). Molecular cloning, sequence characteristics, and polymorphism analyses of the tyrosinase-related protein 2 / DOPAchrome tautomerase gene of black-boned sheep (Ovis aries). Genome 52: 1001-1011. http://dx.doi.org/10.1139/G09-078 PMid:19953128   Fong HK, Hurley JB, Hopkins RS, Miake-Lye R, et al. (1986). Repetitive segmental structure of the transducin beta subunit: homology with the CDC4 gene and identification of related mRNAs. Proc. Natl. Acad. Sci. U. S. A. 83: 2162-2166. http://dx.doi.org/10.1073/pnas.83.7.2162 PMid:3083416 PMCid:323251   Guex N and Peitsch MC (1997). SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18: 2714-2723. http://dx.doi.org/10.1002/elps.1150181505 PMid:9504803   Hunziker AT (2001). Genera Solanacearum: The Genera of Solanaceae Illustrated, Arranged According to a New System. Gantner Verlag, Ruggell, Liechtenstein. 516.   Hurowitz EH, Melnyk JM, Chen YJ, Kouros-Mehr H, et al. (2000). Genomic characterization of the human heterotrimeric G protein alpha, beta, and gamma subunit genes. DNA Res. 7: 111-120. http://dx.doi.org/10.1093/dnares/7.2.111 PMid:10819326   Ishida S, Takahashi Y and Nagata T (1993). Isolation of cDNA of an auxin-regulated gene encoding a G protein beta subunit-like protein from tobacco BY-2 cells. Proc. Natl. Acad. Sci. U. S. A. 90: 11152-11156. http://dx.doi.org/10.1073/pnas.90.23.11152 PMid:8248221 PMCid:47940   Ishida S, Takahashi Y and Nagata T (1996). The mode of expression and promoter analysis of the arcA gene, an auxin-regulated gene in tobacco BY-2 cells. Plant Cell Physiol. 37: 439-448. http://dx.doi.org/10.1093/oxfordjournals.pcp.a028965 PMid:8759913   Kiyosue T and Ryan CA (1999). Molecular cloning of two cDNAs encoding G-protein beta-subunit-like proteins from tomato (Accession Nos. AB022686 and AB022687). Plant Physiol. 119: 1567.   Knapp S (2002). Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae. J. Exp. Bot. 53: 2001-2022. http://dx.doi.org/10.1093/jxb/erf068 PMid:12324525   Kwon O, Georgellis D and Lin EC (2000). Phosphorelay as the sole physiological route of signal transmission by the arc two-component system of Escherichia coli. J. Bacteriol. 182: 3858-3862. http://dx.doi.org/10.1128/JB.182.13.3858-3862.2000 PMid:10851007 PMCid:94563   Letunic I, Doerks T and Bork P (2012). SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res. 40: D302-D305. http://dx.doi.org/10.1093/nar/gkr931 PMid:22053084 PMCid:3245027   Liliental J and Chang DD (1998). Rack1, a receptor for activated protein kinase C, interacts with integrin beta subunit. J. Biol. Chem. 273: 2379-2383. http://dx.doi.org/10.1074/jbc.273.4.2379 PMid:9442085   Lynch AS and Lin ECC (1996). Responses to Molecular Oxygen. ASM Press, Washington.   Nakai K and Horton P (1999). PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24: 34-36. http://dx.doi.org/10.1016/S0968-0004(98)01336-X   Neer EJ, Schmidt CJ, Nambudripad R and Smith TF (1994). The ancient regulatory-protein family of WD-repeat proteins. Nature 371: 297-300. http://dx.doi.org/10.1038/371297a0 PMid:8090199   Reece J and Campbell N (2002). Biology. Benjamin Cummings, San Francisco.   Schultz J, Milpetz F, Bork P and Ponting CP (1998). SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl. Acad. Sci. U. S. A. 95: 5857-5864. http://dx.doi.org/10.1073/pnas.95.11.5857 PMid:9600884 PMCid:34487   Schwede T, Kopp J, Guex N and Peitsch MC (2003). SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res. 31: 3381-3385. http://dx.doi.org/10.1093/nar/gkg520 PMid:12824332 PMCid:168927   Yu H, Chen S, Xi D, He Y, et al. (2010). Molecular cloning, sequence characterization and tissue transcription profile analyses of two novel genes: LCK and CDK2 from the Black-boned sheep (Ovis aries). Mol. Biol. Rep. 37: 39-45. http://dx.doi.org/10.1007/s11033-009-9532-4 PMid:19340603
2012
M. H. Deng, Wen, J. F., Huo, J. L., Zhu, H. S., Dai, X. Z., Zhang, Z. Q., Zhou, H., and Zou, X. X., Molecular cloning, sequence characterization of a novel pepper gene NADP-ICDH and its effect on cytoplasmic male sterility, vol. 11, pp. 3020-3031, 2012.
Balk J and Leaver CJ (2001). The PET1-CMS mitochondrial mutation in sunflower is associated with premature programmed cell death and cytochrome c release. Plant Cell 13: 1803-1818. PMid:11487694 PMCid:139137   Bartoli CG, Pastori GM and Foyer CH (2000). Ascorbate biosynthesis in mitochondria is linked to the electron transport chain between complexes III and IV. Plant Physiol. 123: 335-344. http://dx.doi.org/10.1104/pp.123.1.335 PMid:10806250 PMCid:59007   Bendtsen JD, Nielsen H, von HG and Brunak S (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340: 783-795. http://dx.doi.org/10.1016/j.jmb.2004.05.028 PMid:15223320   Benkert P, Biasini M and Schwede T (2011). Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics 27: 343-350. http://dx.doi.org/10.1093/bioinformatics/btq662 PMid:21134891 PMCid:3031035   Bergman P, Edqvist J, Farbos I and Glimelius K (2000). Male-sterile tobacco displays abnormal mitochondrial atp1 transcript accumulation and reduced floral ATP/ADP ratio. Plant Mol. Biol. 42: 531-544. http://dx.doi.org/10.1023/A:1006388814458 PMid:10798621   Camacho M, Rodriguez-Arnedo A and Bonete MJ (2002). NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii: cloning, sequence determination and overexpression in Escherichia coli. FEMS Microbiol. Lett. 209: 155-160. http://dx.doi.org/10.1111/j.1574-6968.2002.tb11125.x PMid:12007799   Carlsson J, Lagercrantz U, Sundstrom J, Teixeira R, et al. (2007). Microarray analysis reveals altered expression of a large number of nuclear genes in developing cytoplasmic male sterile Brassica napus flowers. Plant J. 49: 452-462. http://dx.doi.org/10.1111/j.1365-313X.2006.02975.x PMid:17217466   Connett MB and Hanson MR (1990). Differential mitochondrial electron transport through the cyanide-sensitive and cyanide-insensitive pathways in isonuclear lines of cytoplasmic male sterile, male fertile, and restored petunia. Plant Physiol. 93: 1634-1640. http://dx.doi.org/10.1104/pp.93.4.1634 PMid:16667667 PMCid:1062722   Corpas FJ, Barroso JB, Sandalio LM, Palma JM, et al. (1999). Peroxisomal NADP-Dependent Isocitrate Dehydrogenase. Characterization and Activity Regulation during Natural Senescence. Plant Physiol. 121: 921-928. http://dx.doi.org/10.1104/pp.121.3.921 PMid:10557241 PMCid:59455   Ducos E, Touzet P and Boutry M (2001). The male sterile G cytoplasm of wild beet displays modified mitochondrial respiratory complexes. Plant J. 26: 171-180. http://dx.doi.org/10.1046/j.1365-313x.2001.01017.x PMid:11389758   Dutilleul C, Garmier M, Noctor G, Mathieu C, et al. (2003). Leaf mitochondria modulate whole cell redox homeostasis, set antioxidant capacity, and determine stress resistance through altered signaling and diurnal regulation. Plant Cell 15: 1212-1226. http://dx.doi.org/10.1105/tpc.009464 PMid:12724545 PMCid:153727   Fieuw S, Muller-Rober B, Galvez S and Willmitzer L (1995). Cloning and expression analysis of the cytosolic NADP(+)- dependent isocitrate dehydrogenase from potato. Implications for nitrogen metabolism. Plant Physiol. 107: 905-913. http://dx.doi.org/10.1104/pp.107.3.905 PMid:7716247 PMCid:157207   Fujii S, Komatsu S and Toriyama K (2007). Retrograde regulation of nuclear gene expression in CW-CMS of rice. Plant Mol. Biol. 63: 405-417. http://dx.doi.org/10.1007/s11103-006-9097-8 PMid:17086445   Gálvez S and Gadal P (1995). On the function of the NADP-dependent isocitrate dehydrogenase isoenzymes in living organisms. Plant Sci. 105: 1-14. http://dx.doi.org/10.1016/0168-9452(94)04041-E   Gálvez S, Roche O, Bismuth E, Brown S, et al. (1998). Mitochondrial localization of a NADP-dependent [corrected] isocitrate dehydrogenase isoenzyme by using the green fluorescent protein as a marker. Proc. Natl. Acad. Sci. U. S. A. 95: 7813-7818. http://dx.doi.org/10.1073/pnas.95.13.7813 PMid:9636233 PMCid:22766   Gibon Y, Blaesing OE, Hannemann J, Carillo P, et al. (2004). A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16: 3304-3325. http://dx.doi.org/10.1105/tpc.104.025973 PMid:15548738 PMCid:535875   Gueguen V, Macherel D, Jaquinod M, Douce R, et al. (2000). Fatty acid and lipoic acid biosynthesis in higher plant mitochondria. J. Biol. Chem. 275: 5016-5025. http://dx.doi.org/10.1074/jbc.275.7.5016 PMid:10671542   Karpova OV, Kuzmin EV, Elthon TE and Newton KJ (2002). Differential expression of alternative oxidase genes in maize mitochondrial mutants. Plant Cell 14: 3271-3284. http://dx.doi.org/10.1105/tpc.005603 PMid:12468742 PMCid:151217   Kirimura K, Yoda M, Kumatani M, Ishii Y, et al. (2002). Cloning and expression of Aspergillus niger icdA gene encoding mitochondrial NADP+-specific isocitrate dehydrogenase. J. Biosci. Bioeng. 93: 136-144. PMid:16233178   Linke B and Börner T (2005). Mitochondrial effects on flower and pollen development. Mitochondrion 5: 389-402. http://dx.doi.org/10.1016/j.mito.2005.10.001 PMid:16275170   Maxwell DP, Nickels R and McIntosh L (2002). Evidence of mitochondrial involvement in the transduction of signals required for the induction of genes associated with pathogen attack and senescence. Plant J. 29: 269-279. http://dx.doi.org/10.1046/j.1365-313X.2002.01216.x PMid:11844105   Moller S, Croning MD and Apweiler R (2001). Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17: 646-653. http://dx.doi.org/10.1093/bioinformatics/17.7.646 PMid:11448883   Nakai K and Horton P (1999). PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24: 34-36. http://dx.doi.org/10.1016/S0968-0004(98)01336-X   Rhoads DM, Umbach AL, Subbaiah CC and Siedow JN (2006). Mitochondrial reactive oxygen species. Contribution to oxidative stress and interorganellar signaling. Plant Physiol. 141: 357-366. http://dx.doi.org/10.1104/pp.106.079129 PMid:16760488 PMCid:1475474   Sabar M, Gagliardi D, Balk J and Leaver CJ (2003). ORFB is a subunit of F1F(O)-ATP synthase: insight into the basis of cytoplasmic male sterility in sunflower. EMBO Rep. 4: 381-386. http://dx.doi.org/10.1038/sj.embor.embor800 PMid:12671689 PMCid:1319156   Sassi S, Gonzalez EM, Aydi S, Arrese-Igor C, et al. (2008). Tolerance of common bean to long-term osmotic stress is related to nodule carbon flux and antioxidant defenses: evidence from two cultivars with contrasting tolerance. Plant Soil 312: 39-48. http://dx.doi.org/10.1007/s11104-008-9613-5   Sienkiewicz-Porzucek A, Sulpice R, Osorio S, Krahnert I, et al. (2010). Mild reductions in mitochondrial NAD-dependent isocitrate dehydrogenase activity result in altered nitrate assimilation and pigmentation but do not impact growth. Mol. Plant 3: 156-173. http://dx.doi.org/10.1093/mp/ssp101 PMid:20035036 PMCid:2807928   Sun Q, Hu C, Hu J, Li S, et al. (2009). Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther. Protein J. 28: 341-348. http://dx.doi.org/10.1007/s10930-009-9199-7 PMid:19756991   Sweetlove LJ, Heazlewood JL, Herald V, Holtzapffel R, et al. (2002). The impact of oxidative stress on Arabidopsis mitochondria. Plant J. 32: 891-904. http://dx.doi.org/10.1046/j.1365-313X.2002.01474.x PMid:12492832   Tadege M and Kuhlemeier C (1997). Aerobic fermentation during tobacco pollen development. Plant Mol. Biol. 35: 343-354. http://dx.doi.org/10.1023/A:1005837112653 PMid:9349258   Teixeira RT, Knorpp C and Glimelius K (2005). Modified sucrose, starch, and ATP levels in two alloplasmic male-sterile lines of B. napus. J. Exp. Bot. 56: 1245-1253. http://dx.doi.org/10.1093/jxb/eri120 PMid:15753110   Touzet P and Budar F (2004). Unveiling the molecular arms race between two conflicting genomes in cytoplasmic male sterility? Trends Plant Sci. 9: 568-570. http://dx.doi.org/10.1016/j.tplants.2004.10.001 PMid:15564120   Wang Y, Addess KJ, Chen J, Geer LY, et al. (2007). MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. 35: D298-D300. http://dx.doi.org/10.1093/nar/gkl952 PMid:17135201 PMCid:1751549   Wise RP and Pring DR (2002). Nuclear-mediated mitochondrial gene regulation and male fertility in higher plants: Light at the end of the tunnel? Proc. Natl. Acad. Sci. U. S. A. 99: 10240-10242. http://dx.doi.org/10.1073/pnas.172388899 PMid:12149484 PMCid:124896   Yui R, Iketani S, Mikami T and Kubo T (2003). Antisense inhibition of mitochondrial pyruvate dehydrogenase E1α subunit in anther tapetum causes male sterility. Plant J. 34: 57-66. http://dx.doi.org/10.1046/j.1365-313X.2003.01704.x PMid:12662309