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Found 16 results
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2016
X. L. Shen, Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., Hang, Y. Y., Shen, X. L., Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., Hang, Y. Y., Shen, X. L., Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., and Hang, Y. Y., Analysis of genetic diversity of Brassica rapa var. chinensis using ISSR markers and development of SCAR marker specific for Fragrant Bok Choy, a product of geographic indication, vol. 15, p. -, 2016.
X. L. Shen, Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., Hang, Y. Y., Shen, X. L., Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., Hang, Y. Y., Shen, X. L., Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., and Hang, Y. Y., Analysis of genetic diversity of Brassica rapa var. chinensis using ISSR markers and development of SCAR marker specific for Fragrant Bok Choy, a product of geographic indication, vol. 15, p. -, 2016.
X. L. Shen, Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., Hang, Y. Y., Shen, X. L., Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., Hang, Y. Y., Shen, X. L., Zhang, Y. M., Xue, J. Y., Li, M. M., Lin, Y. B., Sun, X. Q., and Hang, Y. Y., Analysis of genetic diversity of Brassica rapa var. chinensis using ISSR markers and development of SCAR marker specific for Fragrant Bok Choy, a product of geographic indication, vol. 15, p. -, 2016.
L. Guo, Yang, S., Li, M. M., Meng, Z. N., Lin, H. R., Guo, L., Yang, S., Li, M. M., Meng, Z. N., and Lin, H. R., Divergence and polymorphism analysis of IGF1Ra and IGF1Rb from orange-spotted grouper, Epinephelus coioides (Hamilton), vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSResearch supported by the Special Fund for the National Natural Science Foundation of China (#31370047), the Special Fund for Agro-scientific Research in the Public Interest (#201403008 and #201403011), and the Guangdong Provincial “Yang Fan” Program (#201312H10). REFERENCESAntoro S, Na-Nakorn U, Koedprang W, et al (2006). Study of genetic diversity of orange-spotted grouper, Epinephelus coioides, from Thailand and Indonesia using microsatellite markers. Mar. Biotechnol. (NY) 8: 17-26. Barrett JC, Fry B, Maller J, Daly MJ, et al (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265. Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, et al (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23: 2633-2635. Campbell NR, LaPatra SE, Overturf K, Towner R, et al (2014). Association mapping of disease resistance traits in rainbow trout using restriction site associated DNA sequencing. G3 (Bethesda) 4: 2473-2481. FAO (2016). Global Production Statistics 1950-2014. Food and Agriculture Organization. Available at http://www.fao.org/figis/servlet/SQServlet?file=/work/FIGIS/prod/webapps/figis/temp/hqp_3045327508054819982.xml&outtype=html. Accessed July 17, 2016. Froese R and Pauly D (2011). FishBase: www.fishbase.org, version. Accessed on 10 April 2013. Fontenele EG, Moraes ME, d’Alva CB, Pinheiro DP, et al (2015). Association Study of GWAS-Derived Loci with Height in Brazilian Children: Importance of MAP3K3, MMP24 and IGF1R Polymorphisms for Height Variation. Horm. Res. Paediatr. 84: 248-253. Gu X, Vander Velden K, et al (2002). DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Bioinformatics 18: 500-501. Guo L, Xia J, Yang S, Li M, et al (2015a). GHRH, PRP-PACAP and GHRHR Target Sequencing via an Ion Torrent Personal Genome Machine Reveals an Association with Growth in Orange-Spotted Grouper (Epinephelus coioides). Int. J. Mol. Sci. 16: 26137-26150. Guo L, Xia J, Yang S, Li M, et al. (2015b). Rapid detection of SNPs in candidate genes regulating the growth of orange-spotted grouper, Epinephelus coioides (Hamilton, 1822), using semiconductor sequencing. Aquac. Res., online (DOI: http://dx.doi.org/10.1111/are.12897). Helyar SJ, Hemmer-Hansen J, Bekkevold D, Taylor MI, et al (2011). Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Mol. Ecol. Resour. 11 (Suppl 1): 123-136. Hoopes BC, Rimbault M, Liebers D, Ostrander EA, et al (2012). The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs. Mamm. Genome 23: 780-790. IUCN (2012). IUCN Red List of Threatened Species. Version 2012.2. www.iucnredlist.org. Accessed on 10 April 2013. Jin S, Chen S, Li H, Lu Y, et al (2014). Associations of polymorphisms in GHRL, GHSR, and IGF1R genes with feed efficiency in chickens. Mol. Biol. Rep. 41: 3973-3979. Kuang YM, Li WS, Lin HR, et al (2005). Molecular cloning and mRNA profile of insulin-like growth factor type 1 receptor in orange-spotted grouper, Epinephelus coioides. Acta Biochim. Biophys. Sin. (Shanghai) 37: 327-334. Lei M, Peng X, Zhou M, Luo C, et al (2008). Polymorphisms of the IGF1R gene and their genetic effects on chicken early growth and carcass traits. BMC Genet. 9: 70. Li J, Wu P, Liu Y, Wang D, et al (2014). Temporal and spatial expression of the four Igf ligands and two Igf type 1 receptors in zebrafish during early embryonic development. Gene Expr. Patterns 15: 104-111. Librado P, Rozas J, et al (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452. Liu JP, Baker J, Perkins AS, Robertson EJ, et al (1993). Mice carrying null mutations of the genes encoding insulin-like growth factor I (Igf-1) and type 1 IGF receptor (Igf1r). Cell 75: 59-72. Maures T, Chan SJ, Xu B, Sun H, et al (2002). Structural, biochemical, and expression analysis of two distinct insulin-like growth factor I receptors and their ligands in zebrafish. Endocrinology 143: 1858-1871. Meng ZN, Yang S, Fan B, Wang L, et al (2012). Genetic variation and balancing selection at MHC class II exon 2 in cultured stocks and wild populations of orange-spotted grouper (Epinephelus coioides). Genet. Mol. Res. 11: 3869-3881. Moe HH, Shimogiri T, Kamihiraguma W, Isobe H, et al (2007). Analysis of polymorphisms in the insulin-like growth factor 1 receptor (IGF1R) gene from Japanese quail selected for body weight. Anim. Genet. 38: 659-661. Nagasawa K and Cruz-Lacierda ER (2004). Diseases of cultured groupers. Southeast Asian Fisheries Development Center, Aquaculture Department Iloilo, Philippines. Nakao N, Tanaka M, Higashimoto Y, Nakashima K, et al (2002). Molecular cloning, identification and characterization of four distinct receptor subtypes for insulin and IGF-I in Japanese flounder, Paralichthys olivaceus. J. Endocrinol. 173: 365-375. Nei M (1987). Molecular evolutionary genetics. Columbia University Press: New York, NY, USA Nei M, Gojobori T, et al (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426. Pierre S, Gaillard S, Prevot-D’Alvise N, Aubert J, et al (2008). Grouper aquaculture: Asian success and Mediterranean trials. Aquat. Conserv. 18: 297-308. Schlueter PJ, Royer T, Farah MH, Laser B, et al (2006). Gene duplication and functional divergence of the zebrafish insulin-like growth factor 1 receptors. FASEB J. 20: 1230-1232. Schlueter PJ, Sang X, Duan C, Wood AW, et al (2007). Insulin-like growth factor receptor 1b is required for zebrafish primordial germ cell migration and survival. Dev. Biol. 305: 377-387. Stephens M, Smith NJ, Donnelly P, et al (2001). A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989. Storey JD, Tibshirani R, et al (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100: 9440-9445. Sved JA, et al (1971). Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor. Popul. Biol. 2: 125-141. Szewczuk M, Zych S, Wójcik J, Czerniawska-Piątkowska E, et al (2013). Association of two SNPs in the coding region of the insulin-like growth factor 1 receptor (IGF1R) gene with growth-related traits in Angus cattle. J. Appl. Genet. 54: 305-308. Tamura K, Stecher G, Peterson D, Filipski A, et al (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30: 2725-2729. Thavamanikumar S, Tibbits J, McManus L, Ades P, et al (2011). Candidate gene-based association mapping of growth and wood quality traits in Eucalyptus globulus Labill. BMC Proc. 5: O15. Tian J, Chang M, Du Q, Xu B, et al (2014). Single-nucleotide polymorphisms in PtoCesA7 and their association with growth and wood properties in Populus tomentosa. Mol. Genet. Genomics 289: 439-455. Wang J, Guo F, Ding S, Wang J, et al (2009). Genetic diversity of different geographical stocks of Epinephelus coioides by microsatellite DNA. Mark. Sci. 11: 60-64. Watterson GA, et al (1975). On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276. Yan J, Warburton M, Crouch J, et al (2011). Association Mapping for Enhancing Maize (Zea mays L.) Genetic Improvement. Crop Sci. 51: 433-449. Yu J, Pressoir G, Briggs WH, Vroh Bi I, et al (2006). A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38: 203-208.  
L. Guo, Yang, S., Li, M. M., Meng, Z. N., Lin, H. R., Guo, L., Yang, S., Li, M. M., Meng, Z. N., and Lin, H. R., Divergence and polymorphism analysis of IGF1Ra and IGF1Rb from orange-spotted grouper, Epinephelus coioides (Hamilton), vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSResearch supported by the Special Fund for the National Natural Science Foundation of China (#31370047), the Special Fund for Agro-scientific Research in the Public Interest (#201403008 and #201403011), and the Guangdong Provincial “Yang Fan” Program (#201312H10). REFERENCESAntoro S, Na-Nakorn U, Koedprang W, et al (2006). Study of genetic diversity of orange-spotted grouper, Epinephelus coioides, from Thailand and Indonesia using microsatellite markers. Mar. Biotechnol. (NY) 8: 17-26. Barrett JC, Fry B, Maller J, Daly MJ, et al (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265. Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, et al (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23: 2633-2635. Campbell NR, LaPatra SE, Overturf K, Towner R, et al (2014). Association mapping of disease resistance traits in rainbow trout using restriction site associated DNA sequencing. G3 (Bethesda) 4: 2473-2481. FAO (2016). Global Production Statistics 1950-2014. Food and Agriculture Organization. Available at http://www.fao.org/figis/servlet/SQServlet?file=/work/FIGIS/prod/webapps/figis/temp/hqp_3045327508054819982.xml&outtype=html. Accessed July 17, 2016. Froese R and Pauly D (2011). FishBase: www.fishbase.org, version. Accessed on 10 April 2013. Fontenele EG, Moraes ME, d’Alva CB, Pinheiro DP, et al (2015). Association Study of GWAS-Derived Loci with Height in Brazilian Children: Importance of MAP3K3, MMP24 and IGF1R Polymorphisms for Height Variation. Horm. Res. Paediatr. 84: 248-253. Gu X, Vander Velden K, et al (2002). DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Bioinformatics 18: 500-501. Guo L, Xia J, Yang S, Li M, et al (2015a). GHRH, PRP-PACAP and GHRHR Target Sequencing via an Ion Torrent Personal Genome Machine Reveals an Association with Growth in Orange-Spotted Grouper (Epinephelus coioides). Int. J. Mol. Sci. 16: 26137-26150. Guo L, Xia J, Yang S, Li M, et al. (2015b). Rapid detection of SNPs in candidate genes regulating the growth of orange-spotted grouper, Epinephelus coioides (Hamilton, 1822), using semiconductor sequencing. Aquac. Res., online (DOI: http://dx.doi.org/10.1111/are.12897). Helyar SJ, Hemmer-Hansen J, Bekkevold D, Taylor MI, et al (2011). Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Mol. Ecol. Resour. 11 (Suppl 1): 123-136. Hoopes BC, Rimbault M, Liebers D, Ostrander EA, et al (2012). The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs. Mamm. Genome 23: 780-790. IUCN (2012). IUCN Red List of Threatened Species. Version 2012.2. www.iucnredlist.org. Accessed on 10 April 2013. Jin S, Chen S, Li H, Lu Y, et al (2014). Associations of polymorphisms in GHRL, GHSR, and IGF1R genes with feed efficiency in chickens. Mol. Biol. Rep. 41: 3973-3979. Kuang YM, Li WS, Lin HR, et al (2005). Molecular cloning and mRNA profile of insulin-like growth factor type 1 receptor in orange-spotted grouper, Epinephelus coioides. Acta Biochim. Biophys. Sin. (Shanghai) 37: 327-334. Lei M, Peng X, Zhou M, Luo C, et al (2008). Polymorphisms of the IGF1R gene and their genetic effects on chicken early growth and carcass traits. BMC Genet. 9: 70. Li J, Wu P, Liu Y, Wang D, et al (2014). Temporal and spatial expression of the four Igf ligands and two Igf type 1 receptors in zebrafish during early embryonic development. Gene Expr. Patterns 15: 104-111. Librado P, Rozas J, et al (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452. Liu JP, Baker J, Perkins AS, Robertson EJ, et al (1993). Mice carrying null mutations of the genes encoding insulin-like growth factor I (Igf-1) and type 1 IGF receptor (Igf1r). Cell 75: 59-72. Maures T, Chan SJ, Xu B, Sun H, et al (2002). Structural, biochemical, and expression analysis of two distinct insulin-like growth factor I receptors and their ligands in zebrafish. Endocrinology 143: 1858-1871. Meng ZN, Yang S, Fan B, Wang L, et al (2012). Genetic variation and balancing selection at MHC class II exon 2 in cultured stocks and wild populations of orange-spotted grouper (Epinephelus coioides). Genet. Mol. Res. 11: 3869-3881. Moe HH, Shimogiri T, Kamihiraguma W, Isobe H, et al (2007). Analysis of polymorphisms in the insulin-like growth factor 1 receptor (IGF1R) gene from Japanese quail selected for body weight. Anim. Genet. 38: 659-661. Nagasawa K and Cruz-Lacierda ER (2004). Diseases of cultured groupers. Southeast Asian Fisheries Development Center, Aquaculture Department Iloilo, Philippines. Nakao N, Tanaka M, Higashimoto Y, Nakashima K, et al (2002). Molecular cloning, identification and characterization of four distinct receptor subtypes for insulin and IGF-I in Japanese flounder, Paralichthys olivaceus. J. Endocrinol. 173: 365-375. Nei M (1987). Molecular evolutionary genetics. Columbia University Press: New York, NY, USA Nei M, Gojobori T, et al (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426. Pierre S, Gaillard S, Prevot-D’Alvise N, Aubert J, et al (2008). Grouper aquaculture: Asian success and Mediterranean trials. Aquat. Conserv. 18: 297-308. Schlueter PJ, Royer T, Farah MH, Laser B, et al (2006). Gene duplication and functional divergence of the zebrafish insulin-like growth factor 1 receptors. FASEB J. 20: 1230-1232. Schlueter PJ, Sang X, Duan C, Wood AW, et al (2007). Insulin-like growth factor receptor 1b is required for zebrafish primordial germ cell migration and survival. Dev. Biol. 305: 377-387. Stephens M, Smith NJ, Donnelly P, et al (2001). A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989. Storey JD, Tibshirani R, et al (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100: 9440-9445. Sved JA, et al (1971). Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor. Popul. Biol. 2: 125-141. Szewczuk M, Zych S, Wójcik J, Czerniawska-Piątkowska E, et al (2013). Association of two SNPs in the coding region of the insulin-like growth factor 1 receptor (IGF1R) gene with growth-related traits in Angus cattle. J. Appl. Genet. 54: 305-308. Tamura K, Stecher G, Peterson D, Filipski A, et al (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30: 2725-2729. Thavamanikumar S, Tibbits J, McManus L, Ades P, et al (2011). Candidate gene-based association mapping of growth and wood quality traits in Eucalyptus globulus Labill. BMC Proc. 5: O15. Tian J, Chang M, Du Q, Xu B, et al (2014). Single-nucleotide polymorphisms in PtoCesA7 and their association with growth and wood properties in Populus tomentosa. Mol. Genet. Genomics 289: 439-455. Wang J, Guo F, Ding S, Wang J, et al (2009). Genetic diversity of different geographical stocks of Epinephelus coioides by microsatellite DNA. Mark. Sci. 11: 60-64. Watterson GA, et al (1975). On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276. Yan J, Warburton M, Crouch J, et al (2011). Association Mapping for Enhancing Maize (Zea mays L.) Genetic Improvement. Crop Sci. 51: 433-449. Yu J, Pressoir G, Briggs WH, Vroh Bi I, et al (2006). A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38: 203-208.  
H. J. Dai, Zhang, Y. M., Sun, X. Q., Xue, J. Y., Li, M. M., Cao, M. X., Shen, X. L., Hang, Y. Y., Dai, H. J., Zhang, Y. M., Sun, X. Q., Xue, J. Y., Li, M. M., Cao, M. X., Shen, X. L., and Hang, Y. Y., Two-step identification of taro (Colocasia esculenta cv. Xinmaoyu) using specific psbE-petL and simple sequence repeat-sequence characterized amplified regions (SSR-SCAR) markers, vol. 15, p. -, 2016.
H. J. Dai, Zhang, Y. M., Sun, X. Q., Xue, J. Y., Li, M. M., Cao, M. X., Shen, X. L., Hang, Y. Y., Dai, H. J., Zhang, Y. M., Sun, X. Q., Xue, J. Y., Li, M. M., Cao, M. X., Shen, X. L., and Hang, Y. Y., Two-step identification of taro (Colocasia esculenta cv. Xinmaoyu) using specific psbE-petL and simple sequence repeat-sequence characterized amplified regions (SSR-SCAR) markers, vol. 15, p. -, 2016.
Y. B. Lin, Zhang, Y. M., Hang, Y. Y., Li, M. M., Zhou, G. C., Shen, X. L., Sun, X. Q., Lin, Y. B., Zhang, Y. M., Hang, Y. Y., Li, M. M., Zhou, G. C., Shen, X. L., and Sun, X. Q., A two-step method for identification of the Chinese glutinous rice Suyunuo, based on ISSR-SCAR and allele-specific markers, vol. 15, p. -, 2016.
Y. B. Lin, Zhang, Y. M., Hang, Y. Y., Li, M. M., Zhou, G. C., Shen, X. L., Sun, X. Q., Lin, Y. B., Zhang, Y. M., Hang, Y. Y., Li, M. M., Zhou, G. C., Shen, X. L., and Sun, X. Q., A two-step method for identification of the Chinese glutinous rice Suyunuo, based on ISSR-SCAR and allele-specific markers, vol. 15, p. -, 2016.