Research Article

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06/30/2020
Copy number of variations; Insertions / deletions; Ovis aries; Sheep; SNPs

We report the whole ram genome of Jordanian Awassi (Ovis aries), screened using the power of Illumina HiSeq sequencing technology, providing insights into the ram's genomic structure. Generated data will help in the assessment of naturally occurring genetic variation and population structure of this sheep breed using different structure variation markers. ... more

N. Haddad; H. Migdadi; R. Al-Atiyat; K. Jawasre; S. Awabdeh; W. Obeidat; R. AlOmari; M. Aldamra; H. Ababneh; M.J. Tabbaa; M. Brake; M. Farooq
07/31/2021
Adaptability indexes; Creole breeds; LD variation; SNPs

Colombian creole breeds Blanco Orejinegro (BON) and Sanmartinero (SM) are widely used as pure breeds and in crossbreeding programs due to their excellent performance in the double ability of milk and meat production. We examined genomic regions and genes that from generation to generation have been selected by positive natural selection in favor of the adaptability ... more

C. De León; R. Martínez; J.F. Rocha; A.E. Darghan
07/31/2022
Ae. speltoides; Ae. tauschii; AP2 domain; DREB; SNPs; T. urartu

The dehydration responsive element (DRE)-binding proteins (DREB) play a role in the signaling network that activates many abiotic stress-responsive genes. We isolated and molecularly characterized the DREB gene from ancestral diploid wheat species growing in Azerbaijan and native to this region. This territory is included in a region that is considered the center ... more

S.M. Rustamova; G.R. Abdullayeva; I.M. Huseynova
09/08/2015
Chicken; Genome-wide association study; Haplotype; Meat quality traits

Meat quality traits are very important in the poultry industry. To identify single nucleotide polymorphisms (SNPs) and candidate genes affecting meat quality traits, a genome-wide association study was performed using the Illumina chicken 60K SNP beadchip in Jinghai yellow chicken. Four meat quality traits were measured. Two SNPs reached 5% Bonferroni genome-wide significance (P < 1. ... more

T. Zhang; Q.C. Fan; J.Y. Wang; G.X. Zhang; Y.P. Gu; Y. Tang
08/21/2015
Haplotype; Hypertension; Mongolian; SLC12A3; TagSNP

Mounting evidence has implicated the SLC12A3 gene in essential hypertension. Here, we examined the potential associations of common variants of the SLC12A3 gene with blood pressure traits in Mongolians in China. Genomic DNA was extracted from 508 unrelated Mongolian patients with essential hypertension and 246 normotensive Mongolian subjects for genotyping. The genotype ... more

J.Q. Liang; Y.G. Xi; C.Y. An; X.L. Su
08/19/2015
Dysmicoccus brevipes (Cockerell); Haplotype; Introduction and cultivation; Pineapple; Pink pineapple mealybug

The pink pineapple mealybug (PPM), Dysmicoccus brevipes (Cockerell) (Hemiptera: Pseudococcidae), is a widespread plant-sucking insect of considerable concern because it transmits the pineapple mealybug wilt-associated virus. Its distribution is closely linked with its host, the pineapple [Ananas comosus (L.) Merrill] because of its wingless and parthenogenetic ... more

Y.B. He; R.L. Zhan; G.M. Sun; J.B. Wu; Y.L. Zhao
12/29/2015
Essential hypertension; Haplotype; Mongolian population; PPARγ gene

The association of single nucleotide polymorphisms (SNPs) in PPARγ with hypertension is controversial. The aim of the present study was to clarify the contributions of PPARγ genetic variants to hypertension through an association study. A total of 414 unrelated Mongolian herdsmen and 524 Han farmers were included in this study. Fourteen intronic SNPs were analyzed and genotyped using a ... more

L. Yang; R.G. Tian; P.Y. Chang; M.R. Yan; X.L. Su
12/28/2015
Essential hypertension; Haplotype; Mongolian population; NPRA; NPRC

NPRA and NPRC are candidate susceptibility genes for essential hypertension (EH) and play a key role in the regulation of plasma levels and biological effects of natriuretic peptides. The aims of the present study were to find new genetic markers in the NPRA and NPRC genes and to assess relationships between variants and EH. A total of 797 unrelated ... more

P.Y. Chang; Z.Y. Liu; L. Qin; P. Zhao
10/02/2015
Haplotype; Proline dehydrogenase; Schizophrenia

Previous studies have suggested that an association exists between the proline dehydrogenase gene (PRODH) and increased schizophrenia risk. We examined the prevalence of the PRODH 757C/T (Arg185Trp), 1766A/G (Gly521Arg), and 1852G/A (intronic mutation) polymorphisms in 175 patients with schizophrenia and 185 control subjects. All subjects were of Iranian ancestry. The ... more

F. Ghasemvand; E. Omidinia; Z. Salehi; S. Rahmanzadeh
01/29/2016
Grain size; GS3; Haplotype; qGL3; Rice

Grain size is an important trait that directly influences rice yield. The qGL3 and GS3 genes are two putative regulators that play a role in grain size determination. A single rare nucleotide substitution (C→A) at position 1092 in exon 10 of qGL3 might be responsible for variations in grain size. However, little is known about the haplotype variations of qGL3 ... more

Y.D. Zhang; Z. Zhu; Q.Y. Zhao; T. Chen; S. Yao; L.H. Zhou; L. Zhao; C.F. Zhao; C.L. Wang; Y.D. Zhang; Z. Zhu; Q.Y. Zhao; T. Chen; S. Yao; L.H. Zhou; L. Zhao; C.F. Zhao; C.L. Wang; Y.D. Zhang; Z. Zhu; Q.Y. Zhao; T. Chen; S. Yao; L.H. Zhou; L. Zhao; C.F. Zhao; C.L. Wang

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